Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0073 ATGGCCCATGACACTCTACAGAACAAGAAGAACAAGGGAATTCCTGAGTTTGGGAAAGTGCAACAAATATTAAGCAGCATTGGTTTGAGAACCCCATCAGACTATGATAGAGAAATTTCAAAGCTAGAGATTGAAGCTCAGTATCAGGCAGGTACAGGAGGGTTAATCGTTATGTCTAATATACATAATCTCATATCTCTGGTTACTTATTCAAAATCCTTGATATTCAGAGATGGTAAAAATGAGATAGATGAAGACTGTAAGCCAGCAGTGCCCGCATTCACATATAAGAACTCTGATAATTCTTTTTCTCCACCTTCTTCTCAGATGACATCGTCAGAACCTAATGTTCCTGATGAATTTCGATGCTCAGTTTCACTTGATTTAATGAGAGATTCGGTGATTGTATCATCTGGGCATACATATGATCGAATTTCAATTGCACACTGGATAAACTCGGGACATCACACTTGTCCAAAAAGTGGGCAAAGATTAATAAACACCGCTCTCATACCCAACCATGCATTAGAGAGTCTTGTGCAGCAATGGTGCGATGAGAATAATATCCCAGTGAATGAGCCGACATCATCTTCATCCTCAACTTCGGAGGATCCCAACAGAAAGGACAACTCAAACGAAAATACCGTTGATCATATCTCTGCTAAAAAAGCAGCCATAGATGCTGTCAAAATGACACCAGAGTTTCTAGTGGGAAAATTGGCAACTGGAATCATCGCCGAGGCAGGGGCAATTCCATTTCTAGTGACATTACTGGGATCCCATGATCCAAGAATCCAGGAGCATGCCGTCACGACCTTGTTTAATCTCTCCATATTCGACAATAACAAGGTTTTGATAATGGCTGCCGGAGCAGTGGATCACATAGTACAAGTGCTTGAATCAGGGAAAACCATAGAGGCAAGAGAAAATGCAGCAGCAGCAATCTTTAGTTTGACTATGATTGATGACTGCAGGGGAACTCCTATTGGGAAAAGAGATGCTGCAACTGCCATTTTCAATCTTGCAGTTTACAATCCTAACAAGGTCAAAATCGTTAATGCTGGGGCTGTTTCTTTGCTGATCAAGTTGCTTATGGATGATAAGGCTGGGATCACAGATGATTCTCTGGCGGTGCTTGCTGTGCTTCTGGGTTGCTCTGAAGGTTTGGAGAAGATAAGGAACAGTAAAGTGTTGGTGCCTCTTTTGATTGATCTTTTGAGGTTTGGGTCAGCCAAAGGGAAGGAGAATTCTATAACACTTTTGCTGGGGTTGTGCAAGGAAGAAGGTGAAGTGGTGGCAAGGAGACTATTGGCAAATCCACGAAGCATTCCTTCTCTTCAAAGCTTGGCCGCTGACGGTTCTTTAAGAGCACGAAGGAAGGCCGATGCTTTGCTTAGACTGCTCAACAGATGTTGCTCTCAGCCTCATCATTCTCTTTGA 1440 0.4257 MAHDTLQNKKNKGIPEFGKVQQILSSIGLRTPSDYDREISKLEIEAQYQAGTGGLIVMSNIHNLISLVTYSKSLIFRDGKNEIDEDCKPAVPAFTYKNSDNSFSPPSSQMTSSEPNVPDEFRCSVSLDLMRDSVIVSSGHTYDRISIAHWINSGHHTCPKSGQRLINTALIPNHALESLVQQWCDENNIPVNEPTSSSSSTSEDPNRKDNSNENTVDHISAKKAAIDAVKMTPEFLVGKLATGIIAEAGAIPFLVTLLGSHDPRIQEHAVTTLFNLSIFDNNKVLIMAAGAVDHIVQVLESGKTIEARENAAAAIFSLTMIDDCRGTPIGKRDAATAIFNLAVYNPNKVKIVNAGAVSLLIKLLMDDKAGITDDSLAVLAVLLGCSEGLEKIRNSKVLVPLLIDLLRFGSAKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSQPHHSL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0073 479 MobiDBLite consensus disorder prediction 188 216 - -
Lele02g0073 479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 192 IPR013083 -
Lele02g0073 479 CDD RING-Ubox_PUB 121 163 IPR045210 -
Lele02g0073 479 SUPERFAMILY RING/U-box 108 191 - -
Lele02g0073 479 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 249 291 IPR000225 GO:0005515
Lele02g0073 479 FunFam RING-type E3 ubiquitin transferase 117 189 - -
Lele02g0073 479 Pfam Armadillo/beta-catenin-like repeat 245 277 IPR000225 GO:0005515
Lele02g0073 479 Pfam U-box domain 117 188 IPR003613 GO:0004842|GO:0016567
Lele02g0073 479 SMART arm_5 385 426 IPR000225 GO:0005515
Lele02g0073 479 SMART arm_5 279 320 IPR000225 GO:0005515
Lele02g0073 479 SMART arm_5 238 278 IPR000225 GO:0005515
Lele02g0073 479 SMART arm_5 344 384 IPR000225 GO:0005515
Lele02g0073 479 Gene3D - 325 471 IPR011989 -
Lele02g0073 479 MobiDBLite consensus disorder prediction 188 205 - -
Lele02g0073 479 SUPERFAMILY ARM repeat 244 468 IPR016024 -
Lele02g0073 479 FunFam RING-type E3 ubiquitin transferase 304 472 - -
Lele02g0073 479 Gene3D - 203 324 IPR011989 -
Lele02g0073 479 MobiDBLite consensus disorder prediction 98 117 - -
Lele02g0073 479 ProSiteProfiles U-box domain profile. 116 190 IPR003613 GO:0004842|GO:0016567
Lele02g0073 479 SMART Ubox_2 120 183 IPR003613 GO:0004842|GO:0016567
Lele02g0073 479 PANTHER U BOX DOMAIN-CONTAINING 18 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0073 Lele-ChrLele02 432724 434292 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0073 115 478 U-box Gene Family AT3G46510 42.065 1.22e-83 269