Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0056 ATGTGTGATATGATTTGTTTTCCTGCATCGGGTCCCCGACGGGATTGTCACGTCCCCAACATGAGCTCTGCTAATGCCCATAGTCACCCCCCGCTTCACTCGGACTCCTCCGACACCGATTCCGACCACGGGCAGTCCAGCTCGGTGCTCCTTCGCCACACGGACCTCTCAGACTCCATTTTCAAATCCTATTTCGAGTTCATCGGCCAGTCATCGGCAACCGCTGCTGACCTTTCAAAGATCCAGTCTTTTCTCACATCCTCCTCCTCCGGCGCTCTATCATGCCTGATATGCCTCGAACGCATCAGACCCTCCGACCCCACCTGGTCCTGCACCTCCCTCTGCTACGCCGTCTTCCATCTTTTCTGCATACAGAGCTGGGCGCGCCAGGCATCCGACCTCGCTGCCGCACGCGTCGCAAACCGCCTACCTGTTACAGCTGACAAGGCTGCCGAGTCTGCCACATGGAACTGCCCTAAATGCAGGGCTGAATACTCCAAAACTCAGATCCCTAAATCCTATGTGTGTTTCTGTGGAAAATTGGAGAATCCTCCAAGTGATGATCCCTGGGTATTGCCACATTCATGTGGTGAGGTTTGTAATAGGCCGTTGAAGAACAATTGCGGGCATTATTGCTTGTTGCTGTGTCATCCAGGGCCTTGCCCATCGTGCCCAAAGCTTATCAAGTCTCGATGCTTTTGCGGGTCTCTTCAAGATGTTCGCAGATGCGGGTATAAGGAATTTTCCTGTAACAATCCTTGTTCGAAGCTCTTGGACTGTGGCGTTCACAGGTGTTCTGAGATCTGTCATGTTGGCCCCTGCCCCCCTTGCCGAGCACGTGGAGTTTTTAAGTGCCGATGCGGGCAGAGAAAGGAGGAGAGGGAGTGTTGCGATCGCATTTTTCAATGCGATACTCCATGCGAGAAGCTTCTTAGCTGCGGGAAGCATATTTGTGAGAAAGGATGTCATTCGGGTGGGTGTGGCGACTGCCCTTTTCAGGGTAAGAGAACGTGCCCGTGTGGGAAGAGGATTTATAAAGACATTCCTTGTGATGCTCTGGTACAATTGTGTGGAGCGACTTGCGATAAAATGCTCAGTTGCGGATATCACAAGTGCCCTGAGAGATGCCACCGTGGGCAATGCATTAAGACCTGCAGAACTGTTGTAAGGAAATCCTGCCGTTGTGGGAGCCTGAAGAAAGAGGTCCCATGCTGTCAAGAGTTGTCATGCGATAGGAAGTGTCAGATGATACGTGACTGTGGGCGGCATCCATGTAGACGTCGCTGTTGTGATGGTGACTGCCCTCCATGTTCCGAGATATGTGGCAAGAGGCTTCGATGTAAAAACCATAAATGTTCTTCTCCATGCCACAGGGGTCCCTGTGCGCCATGTCCAATAATGGTAACAATCTCATGTGCATGTGGTGAGACACACTTTGAGGTTCCTTGTGGTACTGAAATGAATCAAAAGCCGCCTAAATGCCCAAAACGTTGTCCCATTACTCCTTTATGCAGGCATGCACCAAATTCCAAGCCTCACAAATGTCATTATGGAGCCTGTCCTCCTTGTCGGCTTCCTTGTGAAGAAGAGTACCCTTGTGGCCACAAATGCAAATTAAGGTGTCATGGTCCAAAACCTCCGCCTAATCCAGAGTTTACACTGAAGCCAAAGAAAAAGAAGATAATACAGCAGAGTGAAGGTGTTCCTGGAACTCCCTGCCCTCCTTGTCCTGAACTTTTATGGAGATCATGTGTTGGACAACACGTTGGAGCAGAGAGAATGATGGTCTGCTCTGATAGATCGCAATTTTGCTGTGAAAATTTGTGTGGAAACCCTCTACCATGCGGTAATCATTTTTGTACTAAAACCTGTCATGCCTTAGAGACACTGTCTTCCTTGCACAAGCTACAGAGAAGTGAGCCTTGCGAAGATTGTTGTCTTCCATGCGAAAAGGTAAGAGAGCCTAAGTGTCCACATCACTGCCCTCAGCCTTGCCATCCTGGGGAATGCCCTCCATGCAAAGTGCTCATTAAACGGTCTTGTCATTGTGGCTCAATGGTCCATGTTTTTGAGTGCATCTATTACAACAGCTTGTCTGCCAAGGATCAAGAGACTGTTCGATCATGCCGTGGGCCTTGTCACAGAAAGTTGCCATATTGTACACATCTGTGCCCGGAGACATGTCATCCTGGTCAATGCCCATATCCTGATCAATGTTCTAAAAAGGTCACTGTTCGTTGCAAATGCCAAACGCTGAAGAAAGAGTGGCTATGTCAAGCTGTTCAAGCAGCCTATCATCGTGATGGTTGCCATCCCAGAGATATACCCAAAAATCACTTCGGAATTGGACTTATTCCTTGCAATTCTGATTGTAAGAGTAAAGTGCAAGTTGTCGAGTCAGAACTGCATTTACGTAAATCCCAAGTTGTGGAGGAAAAAGCGCTCGAGACTGGAAAGTCAGCACCAAAACGACGGAGAAGGAGGGAACGCATACAGGAGTCCAACCAATCAACAAAACTGCAGAAAATTGCATCTACTGCGAAGCGGCTTCTTCTATCTGTCTGTCTTTTTGTGGCCCTTCTTGCGGCCATATATTATGGTTACAAGGGTCTTTTATGGCTCAATGATTGGATGAATGAAGTTGATGAGCGAAGACACAGAAGATATTCTCGAATCTCATAA 2682 0.4866 MCDMICFPASGPRRDCHVPNMSSANAHSHPPLHSDSSDTDSDHGQSSSVLLRHTDLSDSIFKSYFEFIGQSSATAADLSKIQSFLTSSSSGALSCLICLERIRPSDPTWSCTSLCYAVFHLFCIQSWARQASDLAAARVANRLPVTADKAAESATWNCPKCRAEYSKTQIPKSYVCFCGKLENPPSDDPWVLPHSCGEVCNRPLKNNCGHYCLLLCHPGPCPSCPKLIKSRCFCGSLQDVRRCGYKEFSCNNPCSKLLDCGVHRCSEICHVGPCPPCRARGVFKCRCGQRKEERECCDRIFQCDTPCEKLLSCGKHICEKGCHSGGCGDCPFQGKRTCPCGKRIYKDIPCDALVQLCGATCDKMLSCGYHKCPERCHRGQCIKTCRTVVRKSCRCGSLKKEVPCCQELSCDRKCQMIRDCGRHPCRRRCCDGDCPPCSEICGKRLRCKNHKCSSPCHRGPCAPCPIMVTISCACGETHFEVPCGTEMNQKPPKCPKRCPITPLCRHAPNSKPHKCHYGACPPCRLPCEEEYPCGHKCKLRCHGPKPPPNPEFTLKPKKKKIIQQSEGVPGTPCPPCPELLWRSCVGQHVGAERMMVCSDRSQFCCENLCGNPLPCGNHFCTKTCHALETLSSLHKLQRSEPCEDCCLPCEKVREPKCPHHCPQPCHPGECPPCKVLIKRSCHCGSMVHVFECIYYNSLSAKDQETVRSCRGPCHRKLPYCTHLCPETCHPGQCPYPDQCSKKVTVRCKCQTLKKEWLCQAVQAAYHRDGCHPRDIPKNHFGIGLIPCNSDCKSKVQVVESELHLRKSQVVEEKALETGKSAPKRRRRRERIQESNQSTKLQKIASTAKRLLLSVCLFVALLAAIYYGYKGLLWLNDWMNEVDERRHRRYSRIS 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0056 893 CDD NF-X1-zinc-finger 357 406 - -
Lele02g0056 893 SMART znfxneu3 208 226 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 SMART znfxneu3 367 387 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 SMART znfxneu3 420 439 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 SMART znfxneu3 657 675 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 SMART znfxneu3 260 279 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 SMART znfxneu3 615 651 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 SMART znfxneu3 504 525 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 SMART znfxneu3 313 332 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 SMART znfxneu3 533 578 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 SMART znfxneu3 447 466 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 SMART znfxneu3 720 741 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 SUPERFAMILY RING/U-box 93 170 - -
Lele02g0056 893 CDD NF-X1-zinc-finger 250 298 - -
Lele02g0056 893 CDD NF-X1-zinc-finger 410 458 - -
Lele02g0056 893 MobiDBLite consensus disorder prediction 813 837 - -
Lele02g0056 893 CDD NF-X1-zinc-finger 303 350 - -
Lele02g0056 893 CDD NF-X1-zinc-finger 196 244 - -
Lele02g0056 893 CDD NF-X1-zinc-finger 437 485 - -
Lele02g0056 893 Pfam NF-X1 type zinc finger 533 542 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 Pfam NF-X1 type zinc finger 313 331 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 Pfam NF-X1 type zinc finger 367 385 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 Pfam NF-X1 type zinc finger 420 438 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 Pfam NF-X1 type zinc finger 441 465 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 Pfam NF-X1 type zinc finger 208 225 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 Pfam NF-X1 type zinc finger 659 674 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 Pfam NF-X1 type zinc finger 721 740 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 Pfam NF-X1 type zinc finger 615 625 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 Pfam NF-X1 type zinc finger 514 524 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 Pfam NF-X1 type zinc finger 260 278 IPR000967 GO:0005634|GO:0008270
Lele02g0056 893 MobiDBLite consensus disorder prediction 18 46 - -
Lele02g0056 893 ProSitePatterns Zinc finger PHD-type signature. 95 161 IPR019786 -
Lele02g0056 893 ProSiteProfiles Zinc finger RING-type profile. 95 162 IPR001841 -
Lele02g0056 893 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 70 529 IPR034078 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0056 Lele-ChrLele02 328835 336918 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Lele02g0056 zf-NF-X1 0.0011 No_clan