Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0033 ATGTCTTTTATCGGCACTCAACAGAAATGCAAGGCTTGTGAGAAAACGGTCTATCCTGTTGATCAACTATCTGCCGATGGCACTTCTTACCATAAGGCTTGCTTCAGGTGCTCTCACTGCAAAGGAACCTTAAAGCTAAGCAACTATTCCTCAATGGAAGGTGTCCTTTATTGCAAGCCTCATTATGAGCAGCTCTTCAAGGAGACGGGCGGTTTCAACAAAAACTTCCAGTCACCTGCAAAGTCGGCCGAGAAGACAACTCCTGAGTTGGTAACAGTGGAGGGCCAATCCTACCACAAGTCATGTTTCAAATGTTCCCATGGTGGCTGTCCCCTGTCGCCATCAAATTATGCAGCCCTAGAGGGAATTTTGTATTGCAAGCACCATTTTTCTCAACTCTTTAAGGAGAAAGGGAGCTATAATCATCTCATAAAGTCTGCATCTATAAAGCGGGCTGCAGCCGCTGTTCCAGAAGCTTAG 480 0.4583 MSFIGTQQKCKACEKTVYPVDQLSADGTSYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGGFNKNFQSPAKSAEKTTPELVTVEGQSYHKSCFKCSHGGCPLSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAAAVPEA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0033 159 CDD LIM1_SF3 6 68 - -
Lele02g0033 159 ProSiteProfiles LIM domain profile. 77 136 IPR001781 -
Lele02g0033 159 SMART lim_4 9 61 IPR001781 -
Lele02g0033 159 SMART lim_4 83 129 IPR001781 -
Lele02g0033 159 FunFam LIM domain and actin-binding 1 4 74 - -
Lele02g0033 159 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Lele02g0033 159 PANTHER OS06G0237300 PROTEIN 89 141 IPR045268 -
Lele02g0033 159 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 104 143 - -
Lele02g0033 159 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lele02g0033 159 Pfam LIM domain 10 65 IPR001781 -
Lele02g0033 159 Pfam LIM domain 89 133 IPR001781 -
Lele02g0033 159 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lele02g0033 159 Gene3D Cysteine Rich Protein 4 74 - -
Lele02g0033 159 Gene3D Cysteine Rich Protein 80 142 - -
Lele02g0033 159 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0033 Lele-ChrLele02 231109 232965 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele02g0033 LIM 5.3e-13 CL0167