Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1999 ATGGATAATGGGAAGGCTGAGAATGATCATCCTGAGCAGTCAGTCATCCTTCGTGTTTCTAGTGCTGACAAAATTACTCTTCAGGACATAGGAAGGGAAAGGGTTGACATAATCTCTGAAAAGATGCATCATCTACCTGAAGAATTTCTAGAAGAGCTGAAGAACAGTCTTCGAGTGATCCTTGAGGGAGGGAATGGTTCACAGCACAGGGAGGAATTTTTCATTTTGCAGAGGCTTGTTCAAAGTAGAACTGATTTAACAGCCAAGACTTTGATTAGAGCACATCATGTGCAGCTTGAAATCCTTGTTGCTATTAATACTGGAATTCAGGCATTTTTGCATCCCAACATCAGCCTTTCACAACCTTCCCTCATTGAGATCTTTGTGTACAAGAGATGTAGAAATATAGCTTGTCAAAACCAGATTCCTGCTGATGACTGTACCTGTGAAATATGCACCAGCAGAAATGGTTTCTGTAATCTCTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGAAGTAAATACGTCCCGCTGGATTGGATGTGATTTATGCTCTCATTGGACTCATACAGATTGTGCCATTCGTGATCAACTTATTTGCATTGGTCCTTCTGCAAAGAGTGGTGCAGGACTAAGTGAAATGGTTTTCAGATGCCACGCATGCAAGAGGACTTCAGAGCTGTTGGGTTGGGTTAAAGATGTTTTCCAGCATTGTGCGCCATCTTGGGATGGGGAGGCTTTAATGAGGGAACTTGATTTTGTTAGCAGGATCTTTCACGGTAGTAAAGACCCCATAGGGAGGAAACTATTCTGGAAGTGTGATGATCTAAAGGAGAAAATGAAAAGTGGAATAGTGGAACCAATTGCTGCCTGCCAGGCAATATTGACGTTTTTCCAAGAGCTTGAGGTGGACTCCCCAAAGAGCCTTGAAAATGGAGAAAGTGGAAGGATGATTGCTCCACAGGATGCATGCAATAGAATTGCTGACGTAGTGCAGGAGGCTATTAGAAAAATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTCTTGAGGCTTGTGATCGAGAATTGGCAGATAAGGCGAGGGAAGCAGCAGAACTAAAGATGGACAGGCAAAAACAGAAATTACAGAGAGAAGAACTGGAGAGAATCATGAGGCTTAAAACTGCAGAGGCTGATATGTTCCAGCTTAAGGCTAATGAGGCTAAACGAGAGGCCGAGAGGCTCCAGAGAATTGCTCTTGCCAAATCGGATAAATCGGAGGAAGAATATACTAGCAACTACTTGAAACAACGATTAAGTGAGGCTGAAGCTGAGAAGCAATACCTCTACGAGAAGATCAAATTGCAGGAGAGTTCTCGTGCTTCGCAGAGTAGTGGCGGTGACCCATCTCAGATGCTGATGTATTCCAAAATCCATGATCTGCTCTATAGTGTTCCTCCCAAGGCAGATAGTCAGCCTAATGAGCGTCACCCATTCCGAACAAATCCATGA 1515 0.4356 MDNGKAENDHPEQSVILRVSSADKITLQDIGRERVDIISEKMHHLPEEFLEELKNSLRVILEGGNGSQHREEFFILQRLVQSRTDLTAKTLIRAHHVQLEILVAINTGIQAFLHPNISLSQPSLIEIFVYKRCRNIACQNQIPADDCTCEICTSRNGFCNLCMCVICNKFDFEVNTSRWIGCDLCSHWTHTDCAIRDQLICIGPSAKSGAGLSEMVFRCHACKRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFHGSKDPIGRKLFWKCDDLKEKMKSGIVEPIAACQAILTFFQELEVDSPKSLENGESGRMIAPQDACNRIADVVQEAIRKMEMVADEKMRMFKKARLALEACDRELADKAREAAELKMDRQKQKLQREELERIMRLKTAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKLQESSRASQSSGGDPSQMLMYSKIHDLLYSVPPKADSQPNERHPFRTNP 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1999 504 MobiDBLite consensus disorder prediction 485 504 - -
Lele01g1999 504 SMART PHD_3 163 223 IPR001965 -
Lele01g1999 504 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 41 63 IPR004082 -
Lele01g1999 504 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 83 98 IPR004082 -
Lele01g1999 504 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 425 447 IPR004082 -
Lele01g1999 504 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 243 262 IPR004082 -
Lele01g1999 504 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 124 145 IPR004082 -
Lele01g1999 504 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 98 113 IPR004082 -
Lele01g1999 504 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 386 406 IPR004082 -
Lele01g1999 504 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 170 190 IPR004082 -
Lele01g1999 504 Pfam PHD - plant homeodomain finger protein 133 256 IPR032881 -
Lele01g1999 504 PIRSF UCP025218 1 490 IPR004082 -
Lele01g1999 504 Coils Coil 357 426 - -
Lele01g1999 504 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 13 485 IPR004082 -
Lele01g1999 504 Pfam Coiled-coil region of Oberon 351 483 IPR032535 -
Lele01g1999 504 CDD PHD_OBE1_like 163 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1999 Lele-ChrLele01 24500695 24502648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1999 133 235 PHD Gene Family AT5G57380 32.692 1.32e-09 58.5