Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1997 ATGTCTGTGAATCGGAAGCTCTCTGGGTTAAATGGCAGGATGCCACCAAGTTCCAAGTCAGGCAAGTCAAATGAAGCTTTGCATGAGTTCAATTCTTCACTCAGGAAATGCAAGAAGAAGAAGCCCTTTTTCGTGTGGGGTTTTCTTGGTGTTGTTGCAGTGGGAATTGTATGGTTCTTCATCAGTTCTCACTGTAACTTGATGTTGAGCAAGGAGAAAAGGTTGGATGATTGTGAGGAGAGAGCTCGAATCTTGCTACATCGCCACAATATCAGCAAAAAGCAACTTCATGCTTTCGTTTCCTTCTTCTCTGCATCAGATCAGATTTTATCCCAATGTATCGATGAAAGAAGAGTGCAAAAGCTGTTAAGCGGTGACCCTGGCAATACCTTGCAGATGATATTTTCAGAGAACAAGGAGCATACATGTGTCCCAGGCCAAGTCGAACTTATGGAGCAATGCCCAGTTCTCAATGATTCTGTTCAGAGAAACCTGGAATCATCACTGCTAGTGCAAAAAACTGTATCATTGGCCTCATACTCTGCCATCATGTCCAATTTGGTCAATAATTTGTTTCATGGGAAGAACATTGTGCAGTCATGGGTACTGGAGTTAGTTGCAATTCAGGGTTATCTGACTTTGTCTATAGGATGCTGGTGGATTCTTGTTATAATTACAATTTGTTGCAGATTGGCTGGCATTCCTTTACTTTGGAATCAGAAGCTGGTTTCACAGCCGAAAGAGTTGCAACATTCTGCTGGGCAAAATCCAAAGGGTGCTGGCAGTTGGAGGAAAAAGCTTTTAGTTACATTTGTGTTACTTGGAATAGTTGTGTCAATTTGGTTATTCTGGCATCTGAATAATGATATTATGCTGAGGAGAGAAGAAATGCTCACCACTATGTGTGATGAGCGGGCTCGCATGCTGCAGGATCAATTCAATGTGAGCATGAACCACGTTCATGCTCTGGCTATTCTTGTGTCCACCTTTCACCACAGTAAACATCCATCTGCTATTGACCAGAAAACTTTTGGAGAATATACAGAGAGAACAGCATTTGAAAGACCCCTCACTAGTGGTGTTGCTTATGCTCTGAAAGTTCTCCACTCTGATAGGGAGCATTTTGAAAGGCAGCATGGGTGGACCATTAAGAAAATGGAAACTGAGAATGAAACACTTGTCCAAGATTGTATTCCCGAAAATCTCAATCCTGCACCCATTCAAGATGAATATGCACCAGTAATATTTGCTCAAGAAACTGTTTCCCATATCGTATCTATTGATATGATGTCTGGAAAGGAAGACCGTGAGAATATATTGCGAGCAAGAGCAACCGGAAAGGGAGTGCTAACATCTCCTTTTAAACTACTGAAGTCCAATCACTTGGGTGTTGTCCTTACATTTGCTGTCTACAACGCTAATTTTCCTCCAAATGCTACACCAGAGCAACGCATTGAAGCTACTGTTGGGTACTTGGGTGCTTCCTATGATGTTCCCTCACTGGTGGATAAGCTCCTCCACCAACTTGCCAGCAAGCAAACCATTGTTGTAAATGTTTATGATACAACTAATGCTTCTGCACCTATCAATATGTATGGTACTGATGTTGTTGATACTGGGTTACTACATATAAGCAACCTGGATTTTGGTGATCCTACACGAAAACATGAGATGCATTGCAGGTTCAAGTACAAGCCTTCGCGACCTTGGACAGCAATCAATGCATCAGTTGGGTTACTTGTTATTACTTTGCTTCTTGGTCATATTTTTTATGCAGCAATCAGTCGAATAGCAAAAGTGGAGGATGACTACTGTGAAATGAGGGAGCTCATGGTTCGTGCCGAAGCTGCAGATGTAGCAAAATCTCAGTTTCTGGCAACAGTTTCACATGAGATTAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGATACTGAACTAGATGAAAGCCAGATGGATTGTGCTCAGACTGCTCACAAGAGTGGTAAAGATCTTATATCAGTGATAAATGAGGTTCTTGACCAGGCTAAGATTGAGGCAGGAAAGCTTGAACTTGAAGCTGTAGAATTTGATACACGTTCTATTCTAGATGAAGTCCTATCTCTTTTCTCTGGAAAATCTAATGAAATAGGAATTGAGTTGGCTGTTTACGTATCCAAAATGGTGCCAGAAGTTGTTATTGGTGATCCTAAACGATTCCGGCAAATAATAACTAATCTTGTTGGAAATTCACTTAAGTTCACTCATGTTAAAGGACATGTATTTGTATCGGTTCATTTGGCGAATGAAGTAAAGAGCCCACATCACATTATGGATGTAGTGCTGAGTCAAGGGTTCCTGGACATGTCAGACAGAACCTATAATACATTGAGTGGGTTTCCTGTTGTCAATAGATGGAAAAGCTGGGCAAATTTCAAAAAGTTAAGCAGTATGAATCTGATGGATGAGCCTGGAGTGATTCAATTACTAGTGACAGTCGAGGATACAGGTATAGGAATTCCTTTGGATGCACAAAACCGCATATTCACCCCTTTTATGCAAGCTGATAGTTCCACCTCACGAACATATGGTGGGACTGGAATAGGACTAAGCATTAGTAAATGTTTAGTCGACCTCATGAGAGGAGAAATTGGATTTGTAAGCGAGCCGGGAACTGGCAGTACCTTTTCTTTTAGTGCAACTTTCGGGATACCAAAAGCCTCATCTGTGGGTACAAAGCGGCAGCAGAGCAACCCTTTTGTTTCAGACTTTGAAGGATTGAGAGCACTTGTGGTGGATAGAAGAAAAATCCGTGCGGAAGTTACAAGATATTGTCTGCAGAGGATGGGGATGTCTGTGGATGTTGCTTATAGTCTTAACTCAGCATACTCTTATCTATCTGGTTCTACCAACAAGAGTATTACTAAACAGTTGGAAATGATTGTGATAGACAAGGATGTTTTGGATAAAGAAAGTAGTCTATTGTATGTCATCAAGAAACACAGGCAGAACGACATCAAAAGAGACCCAAAAAGTTTTCCCAAGATTTTTCTCTTGGCTAACAACCGTAGTCCTGATGAACGTGGTGAGCTAAAATCTGTTGGTGTTGTAGATGATATACTAATTAAACCTCTTTGGTTTAGTGCTTTGATTCGCTTCTACAGAGAAGCCCTTGGAAGTGAGAAGAAGCAAATAATTAGAAAGAAAGAACCAAACCTTGGGAACTTGCTAAGACAGAAACATATTTTGGTGGTTGACGATAATGCAGTGAACAGAAAAGTAGCAGAAGGTGTGCTACGAAGATATGGGGCAAAAGTAACCTGTGTGGAGGGCGGCAAGGCTGCCTTAAAGATACTTAAGCCACCGCATAGTTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGACGGATTTGAAGTGACCAGACAAATCCGCTGTCTGGAGAAAGAGTTAAATGAAAAAATTGCACTTGGTGAAGCATCAACAGAGATGTTTGGTAATGTGTCTCATTGGCACATGCCTATATTGGCTATGACAGCTGATGTAACTCAAGCTTCAATCGAAGACTGCAATAGGTGTGGGATGGATGACTACGTGTCAAAGCCATTCGAAGAAGAACAGCTCTATGAGGCAGTGGCGCATTGCTTTGGGTCTGGTTGA 3657 0.4148 MSVNRKLSGLNGRMPPSSKSGKSNEALHEFNSSLRKCKKKKPFFVWGFLGVVAVGIVWFFISSHCNLMLSKEKRLDDCEERARILLHRHNISKKQLHAFVSFFSASDQILSQCIDERRVQKLLSGDPGNTLQMIFSENKEHTCVPGQVELMEQCPVLNDSVQRNLESSLLVQKTVSLASYSAIMSNLVNNLFHGKNIVQSWVLELVAIQGYLTLSIGCWWILVIITICCRLAGIPLLWNQKLVSQPKELQHSAGQNPKGAGSWRKKLLVTFVLLGIVVSIWLFWHLNNDIMLRREEMLTTMCDERARMLQDQFNVSMNHVHALAILVSTFHHSKHPSAIDQKTFGEYTERTAFERPLTSGVAYALKVLHSDREHFERQHGWTIKKMETENETLVQDCIPENLNPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARATGKGVLTSPFKLLKSNHLGVVLTFAVYNANFPPNATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPINMYGTDVVDTGLLHISNLDFGDPTRKHEMHCRFKYKPSRPWTAINASVGLLVITLLLGHIFYAAISRIAKVEDDYCEMRELMVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDESQMDCAQTAHKSGKDLISVINEVLDQAKIEAGKLELEAVEFDTRSILDEVLSLFSGKSNEIGIELAVYVSKMVPEVVIGDPKRFRQIITNLVGNSLKFTHVKGHVFVSVHLANEVKSPHHIMDVVLSQGFLDMSDRTYNTLSGFPVVNRWKSWANFKKLSSMNLMDEPGVIQLLVTVEDTGIGIPLDAQNRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMRGEIGFVSEPGTGSTFSFSATFGIPKASSVGTKRQQSNPFVSDFEGLRALVVDRRKIRAEVTRYCLQRMGMSVDVAYSLNSAYSYLSGSTNKSITKQLEMIVIDKDVLDKESSLLYVIKKHRQNDIKRDPKSFPKIFLLANNRSPDERGELKSVGVVDDILIKPLWFSALIRFYREALGSEKKQIIRKKEPNLGNLLRQKHILVVDDNAVNRKVAEGVLRRYGAKVTCVEGGKAALKILKPPHSFDACFMDLQMPEMDGFEVTRQIRCLEKELNEKIALGEASTEMFGNVSHWHMPILAMTADVTQASIEDCNRCGMDDYVSKPFEEEQLYEAVAHCFGSG 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1997 1218 CDD REC_hyHK_CKI1_RcsC-like 1079 1211 - -
Lele01g1997 1218 SUPERFAMILY CheY-like 920 1055 IPR011006 -
Lele01g1997 1218 Pfam Response regulator receiver domain 1079 1211 IPR001789 GO:0000160
Lele01g1997 1218 PANTHER TWO-COMPONENT HISTIDINE KINASE 227 1210 - -
Lele01g1997 1218 ProSiteProfiles Histidine kinase domain profile. 627 901 IPR005467 -
Lele01g1997 1218 SUPERFAMILY CheY-like 1075 1214 IPR011006 -
Lele01g1997 1218 CDD HATPase_EvgS-ArcB-TorS-like 737 899 - -
Lele01g1997 1218 ProSiteProfiles Response regulatory domain profile. 1078 1215 IPR001789 GO:0000160
Lele01g1997 1218 MobiDBLite consensus disorder prediction 1 25 - -
Lele01g1997 1218 Gene3D CHASE domain 339 566 IPR042240 -
Lele01g1997 1218 PRINTS Bacterial sensor protein C-terminal signature 826 840 IPR004358 GO:0016310|GO:0016772
Lele01g1997 1218 PRINTS Bacterial sensor protein C-terminal signature 844 854 IPR004358 GO:0016310|GO:0016772
Lele01g1997 1218 PRINTS Bacterial sensor protein C-terminal signature 861 879 IPR004358 GO:0016310|GO:0016772
Lele01g1997 1218 PRINTS Bacterial sensor protein C-terminal signature 885 898 IPR004358 GO:0016310|GO:0016772
Lele01g1997 1218 ProSiteProfiles CHASE domain profile. 335 559 IPR006189 -
Lele01g1997 1218 Gene3D - 286 338 - -
Lele01g1997 1218 ProSiteProfiles Response regulatory domain profile. 925 1055 IPR001789 GO:0000160
Lele01g1997 1218 SMART HisKA_10 620 685 IPR003661 GO:0000155|GO:0007165
Lele01g1997 1218 SMART CHASE_2 335 534 IPR006189 -
Lele01g1997 1218 SMART REC_2 1077 1211 IPR001789 GO:0000160
Lele01g1997 1218 SMART HKATPase_4 732 901 IPR003594 -
Lele01g1997 1218 FunFam Histidine kinase 4 339 566 - -
Lele01g1997 1218 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 606 686 IPR036097 GO:0000155|GO:0007165
Lele01g1997 1218 Gene3D - 1072 1217 - -
Lele01g1997 1218 Gene3D - 917 1061 - -
Lele01g1997 1218 Gene3D - 592 683 - -
Lele01g1997 1218 Pfam CHASE domain 338 532 IPR006189 -
Lele01g1997 1218 Gene3D - 684 902 IPR036890 -
Lele01g1997 1218 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 674 896 IPR036890 -
Lele01g1997 1218 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 732 897 IPR003594 -
Lele01g1997 1218 Pfam His Kinase A (phospho-acceptor) domain 620 685 IPR003661 GO:0000155|GO:0007165
Lele01g1997 1218 FunFam Histidine kinase 4 592 683 - -
Lele01g1997 1218 CDD HisKA 620 681 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1997 Lele-ChrLele01 24475431 24484578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1997 42 1215 Miscellaneous Gene Families AT5G35750 57.948 0.0 1323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele01g1997 CHASE 4.1e-35 CL0165