Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1950 ATGCAGGGAGCCGCAGCCGACGGAGAGGCGGTGGACTTCGAGCCGGAGGACGATGACTTGATGGACGAAGATGGCGGCGCCGACGCCTCTGCATCTACGCATGCTCCTCCTCTCCCGAAGCTCAAATCTGCCATCACTGGTGGCGCTTCTTCCCCACTCGCCGGCCCTAAAAAGACCAAAGGCCGAGGCTTTCGTCAGGAAACAGATGCCAATCGTAACACCGGCCTTTCTGGGTCCGATTTCGACTCCCTCGCCGCCGAGGGTGGACCCGGTCCTCAGCGATCGATTGAAGGATGGATTATTCTGGTCACGGGAGTGCATGAGGAAGCACAGGAGGATGATCTACAGAATGCATTTGGTGAATATGGAGAGATTAAAAATCTACATTTAAATCTTGATCGTCGCACTGGTTTTGTCAAAGGTTATGCACTGATCGAATATGAGCATGCTGAAGAGGCCCGAAACGCCATAGAGAATTTGAATGGATTTGAACTTCTTACTCAAACCATTTATGTGGACTGGGCATTTAGTAGTGGACCTGTTAATGGGTCAATGAGAAGAAAGAATGCTAGACCAACGCGGGAACGACGCTCGAGGAGTCCTCGGAGGAGATATTGA 618 0.5178 MQGAAADGEAVDFEPEDDDLMDEDGGADASASTHAPPLPKLKSAITGGASSPLAGPKKTKGRGFRQETDANRNTGLSGSDFDSLAAEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYEHAEEARNAIENLNGFELLTQTIYVDWAFSSGPVNGSMRRKNARPTRERRSRSPRRRY 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1950 205 MobiDBLite consensus disorder prediction 10 25 - -
Lele01g1950 205 MobiDBLite consensus disorder prediction 1 92 - -
Lele01g1950 205 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 177 IPR000504 GO:0003723
Lele01g1950 205 Gene3D - 53 191 IPR012677 -
Lele01g1950 205 MobiDBLite consensus disorder prediction 190 205 - -
Lele01g1950 205 SUPERFAMILY RNA-binding domain, RBD 92 203 IPR035979 GO:0003676
Lele01g1950 205 PRINTS RNA binding motif protein 8 family signature 164 176 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lele01g1950 205 PRINTS RNA binding motif protein 8 family signature 146 162 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lele01g1950 205 PRINTS RNA binding motif protein 8 family signature 53 65 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lele01g1950 205 PRINTS RNA binding motif protein 8 family signature 90 104 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lele01g1950 205 PANTHER RNA-BINDING PROTEIN 8A 7 204 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lele01g1950 205 CDD RRM_RBM8 93 180 IPR033744 GO:0003729
Lele01g1950 205 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 170 IPR000504 GO:0003723
Lele01g1950 205 SMART rrm1_1 100 173 IPR000504 GO:0003723
Lele01g1950 205 MobiDBLite consensus disorder prediction 183 205 - -
Lele01g1950 205 FunFam RNA-binding protein 8A-like 30 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1950 Lele-ChrLele01 23715437 23720019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1950 101 175 Eukaryotic Initiation Factors Gene Family AT3G11400 29.333 2.02e-09 54.3