Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1842 ATGGGCTCCCGGAAGGGTGACAATCCTCACTCCGGCGATGGTGCCAGTCCTGGGTATTTTGAGAAGTATGGGGAGATAACAGATTCGGTGATAGTGAAAGATGGGCATACGGGTCGACCTAGGGGTTTCGGTTTCATTACCTACGCAGATCCTTCTGTTGTTGACCACGTTATTCAGGAGAACCATGTGATCAATAGCAAGCAGGTGGAGATCAAAAGGACAATACCAAAGGGCTCATCACAGGCTAATGATTTTAAAACTAAGAAGATATTTGTTGGTGGTATTCCAACCTCAGTAAGCGAAGATGAATTGAAGAACTTCTTTTCAAAGTATGGAAAGGTTGTGGAGCATGAGATCATTCGTGATCATACTACTAAATGCTCTCGAGGATTTGGATTTGTAGTGTTTGACACTGAAAAAATTGTTAATAATTTGCTGGCAAATGGAAACATGATTGATATGGCTGGTACTCAGGTGAGTTCTATTTGGTTGTTCAGGATATTTCATGTGAACCAAGCCCATGGTATCTTGTATAGTGAAGCAACAACTTGTTCCAATTCAAAAGGACATATTCGTGAAGTTATTTTGCTTTTACTTTCTGTTGTGCAATATAATGCCAAACTATATTTTCATGTTGGAGCTATGCTGTTCGACTCTAGGTATAAGTGGGTTGAGATCAAGAAGGCTGAACCCAAGAAAGCCTCAAACTCAACATCTTTTCCTCCATTTGGTAGTGATAGGGAACGCCCATACAGTGATGGTTATGGTGGATTTGGCGAATCCTATAGCGGTTTTGGCAGTGGCAGTTTTGGTCCTGCTTCTTATAGGTCACTTGGAGGTTTTGGCAGCAGGCTTGGTGATTACAGTGGGTATGGTGGTGATGAGTATGGGGATAGTTTTGGAGGCTATGGTGGTGGTGGAGGTGGTGTTTCTGGGTATCGAGGTGATTCATCATTTGGCTATTCTAGTCGCTATGGTTCTTATATGGGGGGCCTTGGTGATGGATATGGTGGAAGTGGACTAGGGGCATACGGGCGAGGCACTGGGGGCTTTGCAAGCTATGGTGGACCTGGTTCTGGTGGGGGTTATGACTCTGGCCCTGGTGCTGGCTATGGTGGCCCAGGGGCACTGTATGGTAGTAGAGGAGGTTATGGAGGCAGTAGTCGTTACCACCCTTATGCAAGATAG 1188 0.4503 MGSRKGDNPHSGDGASPGYFEKYGEITDSVIVKDGHTGRPRGFGFITYADPSVVDHVIQENHVINSKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDELKNFFSKYGKVVEHEIIRDHTTKCSRGFGFVVFDTEKIVNNLLANGNMIDMAGTQVSSIWLFRIFHVNQAHGILYSEATTCSNSKGHIREVILLLLSVVQYNAKLYFHVGAMLFDSRYKWVEIKKAEPKKASNSTSFPPFGSDRERPYSDGYGGFGESYSGFGSGSFGPASYRSLGGFGSRLGDYSGYGGDEYGDSFGGYGGGGGGVSGYRGDSSFGYSSRYGSYMGGLGDGYGGSGLGAYGRGTGGFASYGGPGSGGGYDSGPGAGYGGPGALYGSRGGYGGSSRYHPYAR 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1842 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 76 IPR000504 GO:0003723
Lele01g1842 395 SMART rrm1_1 14 72 IPR000504 GO:0003723
Lele01g1842 395 SMART rrm1_1 89 162 IPR000504 GO:0003723
Lele01g1842 395 Gene3D - 17 76 IPR012677 -
Lele01g1842 395 Gene3D - 77 160 IPR012677 -
Lele01g1842 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 175 IPR000504 GO:0003723
Lele01g1842 395 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 19 395 - -
Lele01g1842 395 SUPERFAMILY RNA-binding domain, RBD 19 159 IPR035979 GO:0003676
Lele01g1842 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 149 IPR000504 GO:0003723
Lele01g1842 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 62 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1842 Lele-ChrLele01 19301542 19303683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1842 20 152 Eukaryotic Initiation Factors Gene Family AT2G23350 24.183 3.79e-10 59.7