Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1647 ATGGCTGGAACCTTGACGGCGGAGAAGAGTCCCCCGTCGAGCTCGAGGTCGGTGACGGAGACGGTGAATGGTTCGCATAAATTCGTGATTCAAGGGTATTCGTTAGCGAAGGGGATGGGAGTTGGGAAGTACATTGGGAGCGATTTGTTTACGGTGGGAGGGCATCAATGGGCGATTTATTTCTACCCCGATGGTAAGAATCCTGAGGACAATGCAGCCTACGTTTCCGTTTTCATCGCCTTGGCAAGCGATGCCACGGATGTGAGGGCTCTGTTTGAGCTCACGCTTTTGGATCAGAGTGGGCAAGGAAAGCATAAGGTTCATAGCCATTTCGATCGGTCGCTTGAGAGCGGTCCATATACGCTCAAGTATAAGGGTAGCATGATGGAGGATCTTGTGCCACGGAGTTTGCTGCCACTATCTAGTCTGACGGCCATGCTGCACTTTATCTATCGAGATACCCTTACAGATGAGGTTGACATGATTCCATCAACCTCAACTAGTGAATCCTGTGTGTCTGACACATTGTTAGGAAAGTTGTTAGCTGCATCAGACAAGTATGGCTTGGAGAGGCTTAAACTGATGTGTGAATCCCGTATCTGCAAAGACATTTGTGTAAATTCTGTTGCTGACATATTAACCTGGGCTGACCAATGCCATGCAAGAGAGTTGAAAGATGTTTGCTTAAAATTTGCTGCGCAGAATCTAGCAGCTGTGATGAGATCAGATGGATTTCAGTCCATGAAAGATAAATGCCCATGGCTACAGTCAGAGATGTTGATGACAATCGCAGGGTGTGAGAGTGATTACTGCAGTGCTGGGGGGAAATCTTGGAGTGTGTGGGGCCAACTTTCTGATGGTGGTGATTCGGATGGTAGGAGGGTCAGGCAGAGAACCTGA 900 0.4833 MAGTLTAEKSPPSSSRSVTETVNGSHKFVIQGYSLAKGMGVGKYIGSDLFTVGGHQWAIYFYPDGKNPEDNAAYVSVFIALASDATDVRALFELTLLDQSGQGKHKVHSHFDRSLESGPYTLKYKGSMMEDLVPRSLLPLSSLTAMLHFIYRDTLTDEVDMIPSTSTSESCVSDTLLGKLLAASDKYGLERLKLMCESRICKDICVNSVADILTWADQCHARELKDVCLKFAAQNLAAVMRSDGFQSMKDKCPWLQSEMLMTIAGCESDYCSAGGKSWSVWGQLSDGGDSDGRRVRQRT 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1647 299 SMART math_3 28 138 IPR002083 GO:0005515
Lele01g1647 299 Gene3D - 203 273 - -
Lele01g1647 299 SUPERFAMILY POZ domain 125 203 IPR011333 -
Lele01g1647 299 MobiDBLite consensus disorder prediction 1 21 - -
Lele01g1647 299 Pfam BTB/POZ domain 140 202 IPR000210 GO:0005515
Lele01g1647 299 SUPERFAMILY TRAF domain-like 20 110 - -
Lele01g1647 299 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 14 136 IPR045005 GO:0016567
Lele01g1647 299 MobiDBLite consensus disorder prediction 7 21 - -
Lele01g1647 299 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 22 162 IPR008974 GO:0005515
Lele01g1647 299 CDD MATH 24 119 IPR002083 GO:0005515
Lele01g1647 299 ProSiteProfiles MATH/TRAF domain profile. 23 161 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1647 Lele-ChrLele01 11639441 11646223 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele01g1647 BTB 0.00034 CL0033