Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1626 ATGGCGCATAGGTTGCTGAGGGATCATGAAGCAGATGGTTGGGAACGATCTGATTTTCCTATTATATGTGAATCATGCCTTGGTGACAACCCATATGTTCGTATGACAAGAGCTGAGTATGATAAGGAGTGTAAGATTTGTACACGGCCGTTTACTGTTTTTAGATGGAGACCTGGACGAGATGCAAGATATAAGAAAAGTGAGATCTGCCAAACATGTAGTAAATTGAAAAACGTTTGTCAAGTCTGCCTTCTGGATCTTGAGTATGGATTACCAGTTCAAGTCCGGGATACAGCTCTCAGCATCAGTTCCCATGATGCTATTCCAAAGAGTGATGTTAATCGGGAGTATTTTGCTGAAGAACACGATCGCAAGACTCGAGCTGGCTTGGATTATGAATCCTCATATGGGAAAGTACGCCCAAATGATACTATTTTGAAGCTGCAAAGGACTACACCATACTACAAAAGAAACCGGGCTCATATTTGCAGTTTCTACATAAGGGGTGAGTGTACCAGAGGAGCTGAATGCCCTTATAGGCATGAGATGCCAGTGACTGGGGAGTTGTCACAACAAAACATCAAAGATCGTTATTATGGGGTGAATGATCCTGTGGCATTGAAGTTACTTGGCAAGGCAGGAGAGATGACCTCTCTGGAGCCTCCGGAGGATGAGACCATTAGAACTCTTTATGTTGGTGGGCTTGATGCTAGGGTCAGTGAGCAGGATCTTCGTGATCACTTTTACGCCCATGGCGAAATTGAATCCATCAAGATGGTGCTCCAACGTGCTTGTGCTTTCGTAACCTACACAACCAGAGAAGGTGCAGAAAAGGCGGCAGAAGAACTCTCTAACAAGCTAGTCATCAGGGGCCTAAGGTTGAAGCTGATGTGGGGTAGACCTCAGACGTCAAAACCTGACTCTGAAAGTTCTGATCAAGCCAGGCAGCAGGCATCCGTGGCTCATAGCGGGTTGTTGCCTCGAGCCGTCATATCACAACAGCAGAGCCAGGATCAAACTCAGGGAGTGCATTACTATAACATTCCACCTCCACCTCAGCAAGATAGAAGCTACTATCCATCAATGGATCCTCAGAGAATGGGCGCTGTTATTCCGTCCCAAGATGGTGGTCCTCCTGGTGGGGCTACTGGGACCGGCGAGAACAACAAACCCAATTTGGAGAAGCAGCAAATCCAGCATTTTGCCCATCCAATGATGCCTCCACCACCTGGGCAATATCACCATCATCAGTATTACCCCCCGCCCCCGTACGGTTATATGCCCCCTGTACCTGGTTATCAACAATACCCACCACCATACAACCATGGAATGGCTTCATCTCAGCCACCGGCTGTAAACCAGCCATATCAGCATTCCATGAAGCCGGGTTCATCTGATCCCTCAGGGTCAGCACCAACAGGATCAGTACCAGCTGGCGGTTCTGCACCTGCAGAAGCCGGAACATCGACCTCGGCCTCACAGCAGCAGTAA 1491 0.4809 MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSHDAIPKSDVNREYFAEEHDRKTRAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEPPEDETIRTLYVGGLDARVSEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGRPQTSKPDSESSDQARQQASVAHSGLLPRAVISQQQSQDQTQGVHYYNIPPPPQQDRSYYPSMDPQRMGAVIPSQDGGPPGGATGTGENNKPNLEKQQIQHFAHPMMPPPPGQYHHHQYYPPPPYGYMPPVPGYQQYPPPYNHGMASSQPPAVNQPYQHSMKPGSSDPSGSAPTGSVPAGGSAPAEAGTSTSASQQQ 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1626 496 MobiDBLite consensus disorder prediction 438 496 - -
Lele01g1626 496 MobiDBLite consensus disorder prediction 303 320 - -
Lele01g1626 496 SMART rrm1_1 229 297 IPR000504 GO:0003723
Lele01g1626 496 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Lele01g1626 496 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Lele01g1626 496 MobiDBLite consensus disorder prediction 440 475 - -
Lele01g1626 496 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Lele01g1626 496 Gene3D - 212 311 IPR012677 -
Lele01g1626 496 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Lele01g1626 496 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 384 IPR039171 GO:0003723
Lele01g1626 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 287 IPR000504 GO:0003723
Lele01g1626 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Lele01g1626 496 MobiDBLite consensus disorder prediction 328 347 - -
Lele01g1626 496 Pfam Torus domain 142 194 IPR032297 -
Lele01g1626 496 MobiDBLite consensus disorder prediction 299 391 - -
Lele01g1626 496 CDD RRM_RBM22 227 300 - -
Lele01g1626 496 Gene3D - 149 209 - -
Lele01g1626 496 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Lele01g1626 496 SUPERFAMILY RNA-binding domain, RBD 221 308 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1626 Lele-ChrLele01 11331152 11336365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1626 229 289 Eukaryotic Initiation Factors Gene Family AT1G49760 34.848 5.91e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1934 25 26998386 27006860 Lele01g1626 01 11331152 11336365 CCT
Lele26g1977 26 23181435 23193874 Lele01g1626 01 11331152 11336365 CCT
Lele27g0141 27 1108685 1119169 Lele01g1626 01 11331152 11336365 CCT
Lele28g1980 28 23009462 23021646 Lele01g1626 01 11331152 11336365 CCT
Lele01g1626 01 11331152 11336365 Lele03g1621 03 10593465 10597657 hybridization
Lele01g1626 01 11331152 11336365 Lele04g1935 04 23859554 23864022 hybridization