Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1622 ATGGCCGACCGAGTTCACCCGCACGGCTCACATCCCGTTTCTGGCGAATCCCAGCCCGCATCGTCTCCGGAGCACGGTGTCCCCAGAAAACCCACTTCACCAGCTCCGGCGAAGCCTGTCTCGCCTCCGCAGGCTGGAACCTACGTCATCCAGATCCCCAAGGACCAAGTCTACCGCGTGCCTCCGCGGGAGAATGCTCGCCGCCAGAGCCAGTACGCTCGCCGGAAGAACCGCCGGAATTCTTGCTGCTGCTGCCTCTGCTGGCTGATCGGTCTCATCTTCATCCTCATCGTCCTCCTCGGTATTGCCGCTGGCGTTATGTACCTCGTATTCCGTCCGAAGGCACCGGACTACACAATCAACAGCATTGCTGTCAAAGGAGTAAACCTCACATCGGTAGCAGCCGCCTCATCGGCGATCTCGCCGGAGTTCGACGTCGCCGTTCGCGCCGATAACCCAAACAAGAAGATCGGGATTTACTACGAGAAAGATAGCTCTGTAGAAGTGTTCTACAAGGAAGTGATGCTATGTAACGGCGCGTGGCCGGCGTTTTTCCAGCCGTCAAATAACTTCACGGTGTTCCACACGGTATTAAAGGGTTCCAACATTGAGTTGACGACTACAGATGCAAGGGCTTTAGTGAATGCGCAGAGCAAACAAAGAGTGCCGTTAACGTTCAAACTAAGGGCGCCGGTAAAGATCAAGGTGGGTTCCGTTAAGACGTGGAAGATAACCGTTAAAGTTGACTGTGATGTAATGGTGGACAATTTAACGGCGAAGGCTAAGGTTGTTTCAAAAGATTGCAAGTACGGTGTGGATCTATGGTGA 828 0.5399 MADRVHPHGSHPVSGESQPASSPEHGVPRKPTSPAPAKPVSPPQAGTYVIQIPKDQVYRVPPRENARRQSQYARRKNRRNSCCCCLCWLIGLIFILIVLLGIAAGVMYLVFRPKAPDYTINSIAVKGVNLTSVAAASSAISPEFDVAVRADNPNKKIGIYYEKDSSVEVFYKEVMLCNGAWPAFFQPSNNFTVFHTVLKGSNIELTTTDARALVNAQSKQRVPLTFKLRAPVKIKVGSVKTWKITVKVDCDVMVDNLTAKAKVVSKDCKYGVDLW 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1622 275 MobiDBLite consensus disorder prediction 1 44 - -
Lele01g1622 275 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 27 269 - -
Lele01g1622 275 Pfam Late embryogenesis abundant protein 148 250 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1622 Lele-ChrLele01 11265780 11266607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1622 43 275 EF-hand Containing Proteins AT5G21130 44.635 1.47e-71 219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g2117 26 24203845 24208929 Lele01g1622 01 11265780 11266607 CCT
Lele27g0013 27 123736 128497 Lele01g1622 01 11265780 11266607 CCT
Lele28g2115 28 24015727 24019868 Lele01g1622 01 11265780 11266607 CCT
Lele25g2060 25 27920710 27923954 Lele01g1622 01 11265780 11266607 CCT
Lele01g1622 01 11265780 11266607 Lele03g1614 03 10539437 10540264 hybridization
Lele01g1622 01 11265780 11266607 Lele04g1930 04 23800479 23801306 hybridization