Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele01g1582 | ATGTCAAGTGGAGCAACACACTGGTGTTATATGTGCAGACGGGCAATTGTACTTGAAGTGAGAGATTTCACATGCCCTTATTGTGATGGAGGCTTTGTTATAGAACTTGATGAGATGCAAAGAACAGGACATATGGAAGATTTTCATCAAGGACCTGACATTTTTGGTGCTATTCATGCTGTTATGGGGAGGAGATTCTCAGAAACAAGATTTCTAGATTCAGTTGATAATATCATGAGGCAGAGAATGGTTGGAAGAAACCCAAACTTCGATGTTAGAGGGCAACCTATATCTGCAATGGGTCCTGATCAGAGTTGGGGTTTTATTAGCTCTGGTCCTTACTTGATATTTCGTGGTCAGGTTCCTGGATTCACTTTGACTAATGGCACCCCTAGAGGCGGTCCTAGGCGTGTCGATGTTAGTGACTACTTTATGGGGCCTGGACTGGAAGAACTTATCGAACAGCTCACTATGAATGACCGGCATGGCCCGCCCCCAGCCTCACGTTCTTCAATTGATGCAATGCCTACCATAACAATCACACAGGCTCATCTTCGTTCTGACTCTGAATGTCCGGTTTGTCAAGATAAATTTGAACTTGGTTCTGAGGCGAGGGCAATGCCATGTAACCATATTTATCATTCTGACTGTATTGTCCCTTGGTTGGTTCAACATAACTCATGTCCCATTTGCCGTGTTGAGTTGCCACGTCATGGACAAGTCAGTGTCAATCCTCATGCTAGTCGTAATTTGGGAGGAAGTAATGCAGAAAGCACAAATAATGATAGCCTCAGGGAGAGAGAGCAGAGCCAGCAGAACCAAGGAAGGAGAAATCCGTTTTCGTTTTTGTGGCCATTCCGTTCTTCTAGCTCAAACAGTAATAATAATCAATATGCTGAGACTAGAGGAAGCGACTCTTCAAACAGTCGTGACCAGAATAATGGAACGAACCAGAACCATAGCTGA | 966 | 0.441 | MSSGATHWCYMCRRAIVLEVRDFTCPYCDGGFVIELDEMQRTGHMEDFHQGPDIFGAIHAVMGRRFSETRFLDSVDNIMRQRMVGRNPNFDVRGQPISAMGPDQSWGFISSGPYLIFRGQVPGFTLTNGTPRGGPRRVDVSDYFMGPGLEELIEQLTMNDRHGPPPASRSSIDAMPTITITQAHLRSDSECPVCQDKFELGSEARAMPCNHIYHSDCIVPWLVQHNSCPICRVELPRHGQVSVNPHASRNLGGSNAESTNNDSLREREQSQQNQGRRNPFSFLWPFRSSSSNSNNNQYAETRGSDSSNSRDQNNGTNQNHS | 321 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele01g1582 | 321 | MobiDBLite | consensus disorder prediction | 273 | 321 | - | - | |
| Lele01g1582 | 321 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 238 | IPR013083 | - | |
| Lele01g1582 | 321 | SMART | ring_2 | 191 | 231 | IPR001841 | - | |
| Lele01g1582 | 321 | Pfam | zinc-ribbon | 6 | 35 | IPR039525 | GO:0061630 | |
| Lele01g1582 | 321 | FunFam | E3 ubiquitin-protein ligase RING1-like | 155 | 238 | - | - | |
| Lele01g1582 | 321 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 124 | 236 | - | - | |
| Lele01g1582 | 321 | ProSiteProfiles | Zinc finger RING-type profile. | 191 | 232 | IPR001841 | - | |
| Lele01g1582 | 321 | Pfam | Ring finger domain | 190 | 232 | IPR001841 | - | |
| Lele01g1582 | 321 | MobiDBLite | consensus disorder prediction | 242 | 321 | - | - | |
| Lele01g1582 | 321 | SUPERFAMILY | RING/U-box | 171 | 237 | - | - | |
| Lele01g1582 | 321 | MobiDBLite | consensus disorder prediction | 243 | 260 | - | - | |
| Lele01g1582 | 321 | CDD | RING-H2_RNF126_like | 190 | 232 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele01g1582 | Lele-ChrLele01 | 10495397 | 10496362 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele01g1582 | 135 | 236 | C3H Transcription Factor Family | AT5G01980 | 44.231 | 2.78e-25 | 103 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele01g1582 | 01 | 10495397 | 10496362 | Lele03g1579 | 03 | 10121205 | 10126691 | hybridization | |
| Lele01g1582 | 01 | 10495397 | 10496362 | Lele04g1896 | 04 | 23366096 | 23367055 | hybridization |