Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1554 ATGGGCAACTGTTGCTCTGGCAACGACACCGATGCCCCGGCCGCTGAAGCGGAGGTCGCCAAGGGAGGATCCACAAACAACAACAACTCCCAAGGAGGCAGCAACACCGGAGGAGGTAGGGGAGGAGAAGGTGGTGGTGAGGCTTCCACGGAATCATCCCCCACCCCTAATCCTCCTCCGTCGAAGGCCACGAAACCCGGCCCGATGGGCCCCGTCCTCCAGCGTCCCATGGAGGACGTAAAAGCCACATATAACATCGGGAAAGAGCTCGGGAGAGGACAATTCGGAGTCACGCATTTGTGCACGCATAAAGCCACCGGACAACAATACGCGTGCAAGACGATCGCGAAGAGGAAGCTCGCGAATAAAGAAGATATCGAAGACGTGAGGAGGGAGGTTCAGATCATGCACCATTTGGCGGGACAGGGGAACGTGGTGGAGCTGAAAGGAGCGTTTGAAGATAAACATTCGGTGCATCTGGTAATGGAGCTGTGCGCCGGCGGCGAACTGTTCGATAGGATCATCGAGAAGGGGCATTATACAGAACGAGCGGCGGCGTTGTTGATGAGGACGATAGTGCAGATCGTTCGTACTTGTCATTCCATGGGCGTTATTCATAGAGATCTTAAGCCTGAGAATTTCTTGCTCTCGAATAAGAAGGAGGATTCGCCTCTTAAAGCCACCGATTTCGGATTATCCGTTTTCTACAAAGAAGGGGAGACATTTAAAGATATCGTTGGGAGTGCATATTACATAGCTCCAGAAGTATTGAGGAGGAAATATGGGCCAGAAGTTGATATTTGGAGTATTGGTGTGATGCTCTACATTCTTCTTTGTGGTGTTCCTCCTTTTTGGGCAGAATCTGAGCATGGAATCTTCAATGCCATATTAAGAGGCCACGTAGATTTCTCAGCTGATCCATGGCCATCCATATCACCTTCAGCTAAAGATCTTGTCAAGAAAATGTTGAATTCTGATCCCAAGGCCAGGCTCACTGCCCACGAAGTTCTAAATCATCCATGGATTAAGGAGGATGGAGAAGCACCTGATACTCCTCTTGATAATGCTGTGCTCAACAGGCTCAAGCAGTTCAGAGCAATGAACCAATTCAAGAAAGCTGCTTTAAGGGTGATTGCTGGGTGCCTATCAGAGGAAGAAATAATGGGATTGAAGGAAATGTTCAAGAACATGGACTCAGATGGCAGTGGAACCATTACAGTAGAAGAGCTCAAGCAAGGCCTTGCTAAACAAGGAACCAAACTTTCTGAACAAGAAGTTAAACAATTAATGGAAGCTGCTGATGCAGATGGCAATGGGACCATAGATTATGATGAGTTCATCACAGCAACGATGCAGATGAACAGAATGAACAAAGAAGAACATCTCTTCACTGCCTTCCAATACTTTGATAAAGATAACAGCGGGTACATTACCATTGAAGAAATGGAACAAGCTCTCAAGGACTTCAACATGCTTGACGGCAGGGACATCAAAGATATCATCTCAGAAGTTGACTCAGATAATGATGGAAGGATAAACTATGAAGAGTTTGTAGCAATGATGAGAAAAGGAAACCCAGAAGCTATAACCAAGAAGAGACGTGATTCATGTGTTTAA 1617 0.4694 MGNCCSGNDTDAPAAEAEVAKGGSTNNNNSQGGSNTGGGRGGEGGGEASTESSPTPNPPPSKATKPGPMGPVLQRPMEDVKATYNIGKELGRGQFGVTHLCTHKATGQQYACKTIAKRKLANKEDIEDVRREVQIMHHLAGQGNVVELKGAFEDKHSVHLVMELCAGGELFDRIIEKGHYTERAAALLMRTIVQIVRTCHSMGVIHRDLKPENFLLSNKKEDSPLKATDFGLSVFYKEGETFKDIVGSAYYIAPEVLRRKYGPEVDIWSIGVMLYILLCGVPPFWAESEHGIFNAILRGHVDFSADPWPSISPSAKDLVKKMLNSDPKARLTAHEVLNHPWIKEDGEAPDTPLDNAVLNRLKQFRAMNQFKKAALRVIAGCLSEEEIMGLKEMFKNMDSDGSGTITVEELKQGLAKQGTKLSEQEVKQLMEAADADGNGTIDYDEFITATMQMNRMNKEEHLFTAFQYFDKDNSGYITIEEMEQALKDFNMLDGRDIKDIISEVDSDNDGRINYEEFVAMMRKGNPEAITKKRRDSCV 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1554 538 Gene3D Transferase(Phosphotransferase) domain 1 166 349 - -
Lele01g1554 538 ProSiteProfiles EF-hand calcium-binding domain profile. 421 456 IPR002048 GO:0005509
Lele01g1554 538 SMART serkin_6 84 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele01g1554 538 MobiDBLite consensus disorder prediction 21 37 - -
Lele01g1554 538 CDD STKc_CAMK 84 341 - -
Lele01g1554 538 Pfam EF-hand domain pair 390 450 IPR002048 GO:0005509
Lele01g1554 538 Pfam EF-hand domain pair 459 522 IPR002048 GO:0005509
Lele01g1554 538 ProSitePatterns Protein kinases ATP-binding region signature. 90 117 IPR017441 GO:0005524
Lele01g1554 538 PANTHER SERINE/THREONINE-PROTEIN KINASE 78 517 - -
Lele01g1554 538 ProSitePatterns EF-hand calcium-binding domain. 398 410 IPR018247 -
Lele01g1554 538 ProSiteProfiles EF-hand calcium-binding domain profile. 457 492 IPR002048 GO:0005509
Lele01g1554 538 Pfam Protein kinase domain 84 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele01g1554 538 SUPERFAMILY Protein kinase-like (PK-like) 65 369 IPR011009 -
Lele01g1554 538 ProSitePatterns EF-hand calcium-binding domain. 505 517 IPR018247 -
Lele01g1554 538 ProSiteProfiles EF-hand calcium-binding domain profile. 385 420 IPR002048 GO:0005509
Lele01g1554 538 SUPERFAMILY EF-hand 382 522 IPR011992 -
Lele01g1554 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Lele01g1554 538 ProSiteProfiles Protein kinase domain profile. 84 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele01g1554 538 Gene3D - 350 525 - -
Lele01g1554 538 MobiDBLite consensus disorder prediction 1 74 - -
Lele01g1554 538 SMART efh_1 496 524 IPR002048 GO:0005509
Lele01g1554 538 SMART efh_1 425 453 IPR002048 GO:0005509
Lele01g1554 538 SMART efh_1 389 417 IPR002048 GO:0005509
Lele01g1554 538 SMART efh_1 461 489 IPR002048 GO:0005509
Lele01g1554 538 FunFam Calcium-dependent protein kinase 1 86 169 - -
Lele01g1554 538 ProSitePatterns EF-hand calcium-binding domain. 434 446 IPR018247 -
Lele01g1554 538 ProSiteProfiles EF-hand calcium-binding domain profile. 496 527 IPR002048 GO:0005509
Lele01g1554 538 ProSitePatterns EF-hand calcium-binding domain. 470 482 IPR018247 -
Lele01g1554 538 Gene3D Phosphorylase Kinase; domain 1 74 165 - -
Lele01g1554 538 FunFam Calcium-dependent protein kinase 1 350 525 - -
Lele01g1554 538 FunFam calcium-dependent protein kinase 1 170 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1554 Lele-ChrLele01 10133780 10137579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1554 1 535 EF-hand Containing Proteins AT5G12180 78.879 0.0 879
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lele01g1554 Pkinase 7.3e-77 CL0016