Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1533 ATGTCTGACAGTGACCTCAGCTCACTGACATCGCTGGAATTTTATGGAGTTTTCTCCTCCTCCTTTCTCGATCTGTCGTACTTCATCCCCCACCATGTTGTTTGCTTGGTGCTAAACAGTGTCGAGGTTCACTTTGGACCACTCTTTGGTTCCTACTGTGCTTTGCACCATCAAGTTCTTGAACATTGGTTTGGTACGCTTTTCGCAGAAGGAAACTGTAATCGAACAAATTGGAAACTCAACTGTGGAAAACTGAAGTCTGGGCTGGATGCCCTTGTGCTTCTACAGTTCTCTTCTGCCCCAGATGTTATTTGCAAAGATAAAGATGAAGCTGAGGTTTGGTTCAGTGCTTTGAAAGCATTAATATCACGTTGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTTTTCCATCTGGGGCTAATAGTCCCAGAACATACACTAGAAGAAGTTCCCCATTACATTCTCCATTTGGTGGTAGTAATGAAAGCTTGCAAAAGGACAGTGGGGATCACATTCGCCTTCATAGTCCCTTTGAAAGCCCCCCTAAGAATGGTTTGGACAAAGCCTTATCTGATGTGATAATGTATTCTGTTCCTCCAAAGGGTTTCTTCCATCCAGATTCTACTAGTGGTTCAGTCCTCTCAGTATCATCAGGAGGATCAGCCATGGATGCTTTTAGAGTAAGTCTATCAAGTGCTGTCAGCTCATCCAGCCAGGGTTCTGGTCATGATGATGGTGACGCCTTAGGGGATGTTTTCATTTGGGGGGAAGGCACCGGTGACGGTGTTTTGGGTGGTGGGACTCACCATCTCGGTGGAAAAATGGATTCTCTACCGCCCAAGGCCTTGGAATCTGCAGTAGTACTTGATGTACAGAACATAGCTTGTGGTGGACGACATGCTGCCTTGGTGACCAAGCAAGGAGAAATTTTCTCTTGGGGGGAGGAATTAGGAGGCAGGCTTGGGCATGGTGTTGACTCTGATGTTCTTCATCCAAAGCTTATAGAATCTCTGAGTAATACCAATATTGAACTTGTAGCTTGTGGGGAGTACCATACATGTGCTGTGACTCTTTCTGGTGATCTTTATACATGGGGTGATGGCACCTACAATTATGGTCTTTTGGGGCATGGAAATCAAGTGAGCCACTGGGTCCCCAAAAAAGTAAATGGGCCCTTGGAGGGCATACATGTTTCATCTATCTCTTGTGGTCCATGGCACACTGCAGTTGTTACCTCTTCTGGGCAATTATTTACTTTCGGTGATGGTACATTTGGCGTTCTGGGTCATGGGGACAGAAAAAGTGTTAGAATACCGAGAGAAGTAGAGTCCCTTAAGGGTCTTCGTACCGTGCGAACTGCTTGTGGTGTTTGGCATTCTGCTGCAGTTGTAGAAGTCATGGTCGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGCGATGGTGACAAAGGTCGACTTGGGCATGGTGACAAGGAAGCAAAACTTGTTCCTACCTGTGTTGCAGCTCTTGTTGAACCTAATTTTTGTCAAGTTGTGTGTGGACACAGTCTTACTGTTGCACTTACTACCTCAGGCCATGTCTATACCATGGGCAGTCCTGTCTATGGCCAACTAGGAAATTTTCATACTGACGGCAAGTTACCAAAACGTGTTGAAGGAAAGCTCTCAAAAAATTTTGTGGAAGAGATAGCTTGTGGCGCATATCATATTGCAGTTTTAACTTCAAGGACAGAAGTTTACACATGGGGCAAGGGTGCAAATGGTCGTTTAGGCCATGGGGATATAGAGGATAGAAATACTCCAACATTAGTGGAAGCTTTGAAAGACAAACAAGTCAAAAGTATTGCTTGCGGTACTAATTTCACTGCTGCTATCTGTCTTCATAAGTGGGCCTCTGGTGTTGACCAATCCATGTGTTCAGGCTGCCGTCTCCCCTTTAATTTCAAAAGAAAACGTCATAATTGTTATAATTGTGGACTTGTTTTCTGTCATTCATGTAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAATCCCAACAAACCTTATCGGGTCTGTGATAATTGTTATAATAAACTAAGGAAAAGTATTGAAACTGATTCTTCATCTCATTCTTCTGTGAGCAGAAGAGGAAGTATCAATCAGGGGCCACTTGAGTTTAATGATAATGATGATAAATTTGATTCAAGATCTCGCAATCAGATTGGTAGGTTTTCTTCAATGCAATCCTTGAGGCAAGTGGAAAGCAGGTCTTCCAAGAAAAACAAGAAATTGGAATTCAATAGTAGTCGTGTCTCCCCCATTCCAAATGGAAGTTCCCAGTTGGGGGCATCGAATATTTCTAAATCTGTTAATCCTGTTTTTGGATCATCAAAGAAGTTTTTCTCAGCCTCTGTTCCAGGATCTAGAATTGTTTCTCGAGCAACATCCCCAATATCTAGACATCATAGTCCACCTCGCTCAACGACTCCAACCCCAACACTTGGTGGACTTACCTCCCCAAAGATAGGTGTGGATGATGTTAAGAAGACAAACGATAGCCTTAACCAAGAGATTATTAAATTAAGAGCGCAGGTGGAAAATATGACTCGTAAAACTCAACTTCAAGAAGTTGAGTTGGAAAGAGCAACTAAACAGCTGAAGGAAGCAATAGCATATGCTAGTGAAGAAACTTCCAAATGCAAATCAGCAAAGGAAGTGATCAAGTCGCTTACTAACCAGCTGAAGGAGATGGCTGAGAAGCTTCCTGCAGGAGAATCTAAGAATGTGAAATTTCCTTCTGTTGCTTCCTTTGAATCAAATCCTTCTTCTAATGAACTCATCAATACTTCTATTGATGGATTAAGCATGCAAGCTGCTAGCCCAGAACCAGACTTAACGGTACTGAACAACCAGTCACTTTCAAACGGATTAAATACCAACGGTAATCGAAGTGCAGGTCACAACAACAAACAGAACCAGTCAGATGCAACGATTCGAAATGGGAGCAGAACAAAGGAAGGTGAGACTCGTGGTGAAGTTGGATGGGTTGAGCAAGATGAGCCTGGAGTATATATTACATTTACCTCCCTTGGAGGTGTCATAGATCTTAAGAGAGTTCGTTTCAGTCGAAGGCGGTTTAGTGAGAAGCAAGCCGAACAATGGTGGGCTGAGAATCGGGCAAGAGTATACGAGAAGTACAATGTACGCGTGACTGACAAGTCAGCCATGGATGAAGCAATCTGTAAATGA 3261 0.4354 MSDSDLSSLTSLEFYGVFSSSFLDLSYFIPHHVVCLVLNSVEVHFGPLFGSYCALHHQVLEHWFGTLFAEGNCNRTNWKLNCGKLKSGLDALVLLQFSSAPDVICKDKDEAEVWFSALKALISRCHHRKWRTESRSDGFPSGANSPRTYTRRSSPLHSPFGGSNESLQKDSGDHIRLHSPFESPPKNGLDKALSDVIMYSVPPKGFFHPDSTSGSVLSVSSGGSAMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGTHHLGGKMDSLPPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEELGGRLGHGVDSDVLHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKKVNGPLEGIHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDRKSVRIPREVESLKGLRTVRTACGVWHSAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVVCGHSLTVALTTSGHVYTMGSPVYGQLGNFHTDGKLPKRVEGKLSKNFVEEIACGAYHIAVLTSRTEVYTWGKGANGRLGHGDIEDRNTPTLVEALKDKQVKSIACGTNFTAAICLHKWASGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCYNKLRKSIETDSSSHSSVSRRGSINQGPLEFNDNDDKFDSRSRNQIGRFSSMQSLRQVESRSSKKNKKLEFNSSRVSPIPNGSSQLGASNISKSVNPVFGSSKKFFSASVPGSRIVSRATSPISRHHSPPRSTTPTPTLGGLTSPKIGVDDVKKTNDSLNQEIIKLRAQVENMTRKTQLQEVELERATKQLKEAIAYASEETSKCKSAKEVIKSLTNQLKEMAEKLPAGESKNVKFPSVASFESNPSSNELINTSIDGLSMQAASPEPDLTVLNNQSLSNGLNTNGNRSAGHNNKQNQSDATIRNGSRTKEGETRGEVGWVEQDEPGVYITFTSLGGVIDLKRVRFSRRRFSEKQAEQWWAENRARVYEKYNVRVTDKSAMDEAICK 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1533 1086 MobiDBLite consensus disorder prediction 970 1004 - -
Lele01g1533 1086 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 482 533 IPR000408 -
Lele01g1533 1086 MobiDBLite consensus disorder prediction 771 789 - -
Lele01g1533 1086 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 311 362 IPR000408 -
Lele01g1533 1086 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 99 920 - -
Lele01g1533 1086 FunFam Putative E3 ubiquitin-protein ligase HERC1 644 712 - -
Lele01g1533 1086 MobiDBLite consensus disorder prediction 743 758 - -
Lele01g1533 1086 Coils Coil 848 889 - -
Lele01g1533 1086 Pfam FYVE zinc finger 638 704 IPR000306 GO:0046872
Lele01g1533 1086 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 297 307 IPR000408 -
Lele01g1533 1086 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 642 704 IPR017455 -
Lele01g1533 1086 FunFam PH, RCC1 and FYVE domains-containing protein 1 472 643 - -
Lele01g1533 1086 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 253 310 IPR000408 -
Lele01g1533 1086 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 650 711 IPR013083 -
Lele01g1533 1086 PRINTS Chromosome condensation regulator RCC1 signature 420 434 IPR000408 -
Lele01g1533 1086 PRINTS Chromosome condensation regulator RCC1 signature 523 541 IPR000408 -
Lele01g1533 1086 PRINTS Chromosome condensation regulator RCC1 signature 581 602 IPR000408 -
Lele01g1533 1086 PRINTS Chromosome condensation regulator RCC1 signature 313 329 IPR000408 -
Lele01g1533 1086 PRINTS Chromosome condensation regulator RCC1 signature 294 307 IPR000408 -
Lele01g1533 1086 PRINTS Chromosome condensation regulator RCC1 signature 404 420 IPR000408 -
Lele01g1533 1086 PRINTS Chromosome condensation regulator RCC1 signature 363 379 IPR000408 -
Lele01g1533 1086 ProSiteProfiles BRX domain profile. 1017 1071 IPR013591 -
Lele01g1533 1086 Gene3D - 226 479 IPR009091 -
Lele01g1533 1086 Gene3D - 480 649 IPR009091 -
Lele01g1533 1086 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 404 414 IPR000408 -
Lele01g1533 1086 Pfam Unstructured region between BRX_N and BRX domain 940 1010 - -
Lele01g1533 1086 MobiDBLite consensus disorder prediction 818 851 - -
Lele01g1533 1086 SMART fyve_4 636 705 IPR000306 GO:0046872
Lele01g1533 1086 MobiDBLite consensus disorder prediction 710 789 - -
Lele01g1533 1086 SUPERFAMILY RCC1/BLIP-II 252 639 IPR009091 -
Lele01g1533 1086 MobiDBLite consensus disorder prediction 137 168 - -
Lele01g1533 1086 SUPERFAMILY FYVE/PHD zinc finger 639 708 IPR011011 -
Lele01g1533 1086 Coils Coil 897 924 - -
Lele01g1533 1086 MobiDBLite consensus disorder prediction 133 187 - -
Lele01g1533 1086 MobiDBLite consensus disorder prediction 970 1017 - -
Lele01g1533 1086 Pfam Transcription factor regulating root and shoot growth via Pin3 1018 1070 IPR013591 -
Lele01g1533 1086 MobiDBLite consensus disorder prediction 818 840 - -
Lele01g1533 1086 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 363 417 IPR000408 -
Lele01g1533 1086 MobiDBLite consensus disorder prediction 710 729 - -
Lele01g1533 1086 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 534 585 IPR000408 -
Lele01g1533 1086 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 572 582 IPR000408 -
Lele01g1533 1086 FunFam PH, RCC1 and FYVE domains-containing protein 1 224 471 - -
Lele01g1533 1086 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 586 637 IPR000408 -
Lele01g1533 1086 Pfam Regulator of chromosome condensation (RCC1) repeat 311 359 IPR000408 -
Lele01g1533 1086 Pfam Regulator of chromosome condensation (RCC1) repeat 587 634 IPR000408 -
Lele01g1533 1086 Pfam Regulator of chromosome condensation (RCC1) repeat 533 582 IPR000408 -
Lele01g1533 1086 Pfam Regulator of chromosome condensation (RCC1) repeat 362 414 IPR000408 -
Lele01g1533 1086 Pfam Regulator of chromosome condensation (RCC1) repeat 417 466 IPR000408 -
Lele01g1533 1086 Pfam Regulator of chromosome condensation (RCC1) repeat 481 530 IPR000408 -
Lele01g1533 1086 Pfam Transcription factor BRX N-terminal domain 899 929 IPR027988 -
Lele01g1533 1086 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 418 469 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1533 Lele-ChrLele01 9904917 9915268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1533 908 1080 Major Intrinsic Protein MIP AT1G31880 32.973 1.27e-12 68.9