Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1518 ATGTGTGTATTGCCCGTTTGCTTAGCCATGGATTTTCCTGGTTGGAATTTTGAGAATGATTCTTGTGTCTCCAATCAAAAGAAGCCCATGGGGCCGGACCAAGAACTTGTGGAGCTGATATGGCAAAATGGACAGGTAGTGATGCACACCCAAACGCCAAAAAAACCAGCTGCGAATTCTATCGACTCGAGACAGTTCCAGAAACATGATCAATCAACAATCACGGCTAATGACTCGTATGGGAACTCAAGTCATTTGATTCAAGAAGATGACGCAGTCTCATGGATTCAGTATCCACTCGAGGATCCATTGGAACAACAACTATGCTCAAGCATTTTATCTGAACTGCCATCCTCTGGACTTGAGTCTGATAAGCCGATAAGGCAACTCAAAGAGGGAAAGTATGTCAAATTCGGCCCCTACAGTGCCTGCCATGTGCCTGCAAGTGCACAAACACCAAATATAAAGCCCTTTTCTCAGGAATTCTCAGTAAATCCTATGCCTGCTCCAATAGTTCAGTTTCCTGATTCAACCCAGAAAAATATTAATTTTGGTGGATCACATAATGTCCTCAACTTTTCTCAGTTTTCAGAACCCTCCAAAGTAGCCTCAACATATTCTAATGCACAGTCTGAGGATAAAGGTAATGGCAATCTGTTGCAAAACAAGGGCAAAGAGTGCTCAATCATGACTGTTGGTTCAAGTCACTGTGGCAGCAACCAAGTCCCTCTAGATCCTGACATAAGCAGGGCATCAAGCAATGGGGTTTGGACTACTGCTTTATATTCTGAGCCTGAACCCCAGAGGGATGGTATCCAGAAATCAATTCCTCAGAGTGAAAAAGGGAAGTCAGAGGTGGTTGAACCAACTTTGAGTTCATCATCAGATGACTCAGGTAGTCTTGCCAAAACTTGCTACTGGTCTGCAAGAAGTCATGGCCAAAAAAGGAAAAAGATAGATACAGAAGAATTAGAGGAACAAAGTGAGGCCACAGAACCCAAATCGGCTGTTGAAAACAAGGCATCTCAGGGGACAAGGCCTTCGCGAAGGAACCGTGCAGCTGAAGTGCATAATCAATCAGAAAGGAGACGAAGAGATCGGATCAATGAGAAGATGAGGACATTGCAACAACTCATACCTCATAGTAACAAGACAGATAAAGCATCAATGTTAGATGAGGCAATTGAGTACTTGAAGTCACTTCAGTTACAACTTCAGGTAATGTGGATGGGAGCTGGAATGGCACCAATGATGTTTCCCGGAATTCAGCACTATATGTCCCAAATGGGTATGGGAATGGCTTCACCCTCTTTTCCTCCTATTCCCAATTCGGTGCAATTACCACGAACATCACTTGATCATTCCATGTCCATGGCTCAGACACCAAACCGGGGTTTGATGCGTCAAGCTCCTGTTATGAGTCCCTTTACTTATCAAAATCAGATGCAAAATCAAGCTCTCTCAGAGCAATACGCACGTTATATGGGGTATCAATTTATGCAAAGTGCCTCTCAGCCGATGAATGGATTTAATTATGGATCTCAAGTACAAAATAGTCAAACAATGATTCCACCCAGCAATAGCAGTGGACCTTGA 1596 0.4348 MCVLPVCLAMDFPGWNFENDSCVSNQKKPMGPDQELVELIWQNGQVVMHTQTPKKPAANSIDSRQFQKHDQSTITANDSYGNSSHLIQEDDAVSWIQYPLEDPLEQQLCSSILSELPSSGLESDKPIRQLKEGKYVKFGPYSACHVPASAQTPNIKPFSQEFSVNPMPAPIVQFPDSTQKNINFGGSHNVLNFSQFSEPSKVASTYSNAQSEDKGNGNLLQNKGKECSIMTVGSSHCGSNQVPLDPDISRASSNGVWTTALYSEPEPQRDGIQKSIPQSEKGKSEVVEPTLSSSSDDSGSLAKTCYWSARSHGQKRKKIDTEELEEQSEATEPKSAVENKASQGTRPSRRNRAAEVHNQSERRRRDRINEKMRTLQQLIPHSNKTDKASMLDEAIEYLKSLQLQLQVMWMGAGMAPMMFPGIQHYMSQMGMGMASPSFPPIPNSVQLPRTSLDHSMSMAQTPNRGLMRQAPVMSPFTYQNQMQNQALSEQYARYMGYQFMQSASQPMNGFNYGSQVQNSQTMIPPSNSSGP 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1518 531 MobiDBLite consensus disorder prediction 272 307 - -
Lele01g1518 531 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
Lele01g1518 531 MobiDBLite consensus disorder prediction 510 531 - -
Lele01g1518 531 MobiDBLite consensus disorder prediction 313 333 - -
Lele01g1518 531 MobiDBLite consensus disorder prediction 350 368 - -
Lele01g1518 531 CDD bHLH_AtPIF_like 352 415 - -
Lele01g1518 531 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
Lele01g1518 531 SMART finulus 358 407 IPR011598 GO:0046983
Lele01g1518 531 Coils Coil 358 378 - -
Lele01g1518 531 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 349 416 IPR036638 GO:0046983
Lele01g1518 531 PANTHER TRANSCRIPTION FACTOR PIF3 22 518 IPR044273 GO:0003700|GO:0006355
Lele01g1518 531 MobiDBLite consensus disorder prediction 334 349 - -
Lele01g1518 531 Gene3D - 348 408 IPR036638 GO:0046983
Lele01g1518 531 FunFam Basic helix-loop-helix transcription factor 347 410 - -
Lele01g1518 531 MobiDBLite consensus disorder prediction 261 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1518 Lele-ChrLele01 9552363 9555353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1518 228 514 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 39.185 1.16e-39 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele01g1518 HLH 1.6e-14 No_clan