Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1464 ATGGAGCTTCCAAATAATATCCAGCAAGTAGCAGCAGAAGGAGGAGGAGGGTCGTCTTCATCTCTGAAGAAGAATGGAAGAGGGAAAATAGAGATAAAGAGGATAGAGAACACAACGAATAGGCAAGTAACTTTCTGTAAGAGGCGTAATGGCTTACTCAAGAAGGCTTATGAATTGTCTGTTCTTTGCGATGCTGAAGTCGCCCTCGTCGTCTTCTCCAGCCGTGGTCGCTTGTACGAGTACTCCAATAACAGTGTAAGAGCAACTATTGAAAGGTACAAGAAAGCATCCGCTGCTTCCTCTAACACAGAATCTGTAGCTGAAGCTAACACCCAGTTTTATCAACAAGAATCATCCAAGTTAAGAAGGCAGATACACGACATTCAGAATCTAAACAGGCACATAGTGGGTGAAGCTCTGAGCTCATTGAGTCTGAAGGAGCTTAAAAACCTGGAGGGAAGACTAGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGATATTAGAACAGGAGAGAGCACAACAGCAGCAGCAATCAAGTGTGATGCAGCAGCAGGGAAGTGTGTGTGAGTCCATGCCCTCACAATCTTATGATCGCAACTTCTTCCCTGTAAATCTCTTGGCTTCTAATAATCATCACTATTCTTCTAGTCAAGATCACACTGCTCTCCAGCTTGTGTAA 681 0.4347 MELPNNIQQVAAEGGGGSSSSLKKNGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVRATIERYKKASAASSNTESVAEANTQFYQQESSKLRRQIHDIQNLNRHIVGEALSSLSLKELKNLEGRLEKGLSRVRSRKILEQERAQQQQQSSVMQQQGSVCESMPSQSYDRNFFPVNLLASNNHHYSSSQDHTALQLV 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1464 226 Gene3D - 37 118 IPR036879 GO:0003677|GO:0046983
Lele01g1464 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 34 81 IPR002100 GO:0003677|GO:0046983
Lele01g1464 226 SUPERFAMILY SRF-like 26 101 IPR036879 GO:0003677|GO:0046983
Lele01g1464 226 MobiDBLite consensus disorder prediction 1 27 - -
Lele01g1464 226 FunFam agamous-like MADS-box protein AGL11 37 120 - -
Lele01g1464 226 Coils Coil 165 185 - -
Lele01g1464 226 PRINTS MADS domain signature 47 62 IPR002100 GO:0003677|GO:0046983
Lele01g1464 226 PRINTS MADS domain signature 27 47 IPR002100 GO:0003677|GO:0046983
Lele01g1464 226 PRINTS MADS domain signature 62 83 IPR002100 GO:0003677|GO:0046983
Lele01g1464 226 Pfam K-box region 109 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele01g1464 226 MobiDBLite consensus disorder prediction 171 192 - -
Lele01g1464 226 CDD MADS_MEF2_like 26 102 IPR033896 GO:0000977|GO:0045944
Lele01g1464 226 ProSiteProfiles K-box domain profile. 111 223 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele01g1464 226 ProSiteProfiles MADS-box domain profile. 25 85 IPR002100 GO:0003677|GO:0046983
Lele01g1464 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 27 180 - -
Lele01g1464 226 SMART madsneu2 25 84 IPR002100 GO:0003677|GO:0046983
Lele01g1464 226 ProSitePatterns MADS-box domain signature. 27 81 IPR002100 GO:0003677|GO:0046983
Lele01g1464 226 MobiDBLite consensus disorder prediction 11 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1464 Lele-ChrLele01 9096690 9101668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1464 16 226 MADS-box Gene Family AT3G58780 62.348 4.23e-93 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele01g1464 K-box 9e-17 No_clan