Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1446 ATGGCTCCCGGTTTTGTATTCGAAGCTCCCAGCGACGAAGAAATCGAGCGCTCTGATTCTGAAGGCGAAGAACAGGAACAAAGCCAAGAAGAGGAAGCAGAGGATCAGAGTGATTATGATAACGATGATGACGATGACGATGAAGATGAAGGAGAAGAAGAAGAAAGAGCTCGAGTTTCGAATAAGAAATCTCAATCCCCATGGGACTTCGCGAAGTACTCTGAATCCGTCGCGGAGGAACATGCCCGACGAAGCACAACCTCGTTGGATCAGAAAATTGCCAAAGCCATTAAAGAACGCTCCACAGAGCTCAGAAAGCCCGTCGAATATGATCAGGAGAGCTCGGAGTCCGAATCCGACAAACAAGAGGATTATAGACCAGAAGAGGAAGAAGATGAAGATGGAAATGTAGGCGAGAGCAAGGCTTTCTTCGCTCCATCTGACGGAGCTTCATTCCATGCTGATTCATTCATGGAGCTTAATTTGTCGCGTCCTCTGCTCCGGGCTTGTGAGGCCTTAGGATACGTTAAACCGACACCAATTCAGGCAGCGTGTATACCACTTGCTTTGACTGGTCGTGATATATGTGGAAGTGCCATTACCGGTTCTGGGAAGACAGCTGCATTTTCACTGCCTACTCTGGAGAGGCTTTTGTATCGCCCAAAACGTGTGCAGGCCATAAGAGTCCTCATTCTTACCCCAACCAGAGAATTGGCAGTCCAAGTTCACAGTATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGATGTTGCCTGGTCGTTGGGGGTCTGTCTACAAAGGTGCAAGAGGTGGCCTTGAGATCTATGCCGGATATTGTTGTTGCTACTCCAGGACGCATGATAGATCATTTACGCAATTCCATGTCAGTGGATTTAGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTGTTAGAGCTTGGTTTTAATGCTGAAATTCATGAACTTGTTCGCATGTGTCCCAGAAAAAGGCAGACCATGCTATTTTCAGCTACCATGACTGAGGAGGTCGATGAACTTATTAAACTTTCTCTAACAAAACCCTTGCGTCTTTCTGCTGATCCTTCTGCAAAACGGCCAGCAACCTTGACTGAGGAGGTGGTTAGAATAAGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCATTGTGTTCCAAAACTTTTACATCTAAAGTGATCATATTCAGTGGAACAAAACAAGCTGCTCATAGGTTGAAGATTATATTTGGATTAGCTGGTTTGAAAGCTGCTGAGCTTCATGGAAATCTTACTCAGGCCCAGCGTCTTGAAGCTTTAGAGCAGTTTAGGAAGCAGCAAACTGACTTTTTGATTGCAACTGATGTGGCTGCTCGAGGTCTAGATATTATCGGTGTTCAAACAGTCATCAACTTTGCATGTCCACGAGATCTTACCAGTTATGTTCATCGAGTAGGACGTACTGCAAGAGCTGGCAGAGAAGGATATGCTGTTACATTTGTGACTGACAATGACCGGTCGCTTTTAAAAGCAATTGCAAAGAGGGTGGGTTCAAAGCTGAAGAGCCGAGTTGTTGCAGAACAATCTGTAATTAAGTGGTCTCAAACCATTGAGCAAATGGAGGATGAAATTGCTGCAATTCTTGATGAAGAGAGGGAGGAAAGGGCCCTAAGGAAAGCTGAAATGGAGGCAACAAAGGCTGAAAACATGATTGAGCATAGGGAAGAGATATATTCCCGGCCCAAAAGAACTTGGTTTATGACAGGGGTGGAGAAGAAGCTTGCTGCAAAAGCAGCCAAGACGTCTAAGGAAAAGGAGAAGAGCTCTGGGAAGCAAGTAATTAGTGCCGAACAAGCCGAATCCCTAAGAATGAAGGAAAAGAGGAAGCGAGAGCGAGAAAAAAATTTGCCCAGGAAGAAGCGCAGAAAATTGGAAGCTGATAGAGAGATGTTGGAGGATGAAGGTCATTTTGAGAAGCCAGAAGCTAATGAGAAAAATAAGAAAGAAAAGACTGGAATGTCACTTGTGGACGTGGCATATAGACGAGCGAAAGCAGTTAAAGCCGTGAACAAAGCTCTAGATGCTGGCAAAATTGTGAAGAAGGGTCAGAAGAAATCGAATAATTCTTCACGAAAGACTCCTTCAAGGACAGAGGAAATGCGGGAGCTTTTCCAAACTGATATGAGTGAGAAAAAACAAAAAAGAGTTGGTGGGCCAGGGAAGAAGCCCAAAAGTTCATTCAAAAGCAAGTCAAGGTATAAGCGCAGATCATTTATATTACTTGATATTGTCACATTGTTCAACATAGTTTCTTCTATCTCTCAAAAGAAGCAGTCAATAAAGATAAAGCATGAGGGAATTGAGGTTTTTAGGGAATACTTTCCTATTAGTGAAGATTTTATCATGTTGGAGTGTGTATGGAAATCAGATAAGTTTGTATTACTTGAGAATAAGTGTAAGGGTGAAAATGCAAGTAAGAGTGAAGATTCTGGAGGAAGTATCTCCGTCCAAGCATCAGCGATCAACTACAAAAGTATCGAATCTTGTCTTGGAGAAACTGAAAATGACCAACCTGTCTCAGAGAGGACTAATGCAGACTCCTCTGTTAATGATGAGCCCACTCATGTCAAAGGTGTAACCAGTGATTTGTTAAATCAGAAAGAGAAGCGAAGTTGTAATGATGAGGAAAGAGGAGAGAATCCAAGCACCTTAGAAGGAAGAGAGAATCCAGGCACCATAGAAGGCGGCTTCTCTTTCAATGAACTTCCGCCAAAGGAGGATGGCTTGCAATTGCATGCATCACCGAACTCAACCACTATACTTGATTCTTCTTCTTCTTCGAAAGTGGCATTTGTCTCCATCAAGCGTCCTAAATTATCCACACAGCAAGATCTATCTCCATTAGCGGCTTCTGTTAGTGAAAATAGAGAAACTAAAAATGATAAAGAGGAAGATACACTTCTTAATCTACTCTCTCAGGGGATTCCAAGGAATAGTGGTTTTTAG 3015 0.4312 MAPGFVFEAPSDEEIERSDSEGEEQEQSQEEEAEDQSDYDNDDDDDDEDEGEEEERARVSNKKSQSPWDFAKYSESVAEEHARRSTTSLDQKIAKAIKERSTELRKPVEYDQESSESESDKQEDYRPEEEEDEDGNVGESKAFFAPSDGASFHADSFMELNLSRPLLRACEALGYVKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPTLERLLYRPKRVQAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEVALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFNAEIHELVRMCPRKRQTMLFSATMTEEVDELIKLSLTKPLRLSADPSAKRPATLTEEVVRIRRMREVNQEAVLLALCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQQTDFLIATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRVGSKLKSRVVAEQSVIKWSQTIEQMEDEIAAILDEEREERALRKAEMEATKAENMIEHREEIYSRPKRTWFMTGVEKKLAAKAAKTSKEKEKSSGKQVISAEQAESLRMKEKRKREREKNLPRKKRRKLEADREMLEDEGHFEKPEANEKNKKEKTGMSLVDVAYRRAKAVKAVNKALDAGKIVKKGQKKSNNSSRKTPSRTEEMRELFQTDMSEKKQKRVGGPGKKPKSSFKSKSRYKRRSFILLDIVTLFNIVSSISQKKQSIKIKHEGIEVFREYFPISEDFIMLECVWKSDKFVLLENKCKGENASKSEDSGGSISVQASAINYKSIESCLGETENDQPVSERTNADSSVNDEPTHVKGVTSDLLNQKEKRSCNDEERGENPSTLEGRENPGTIEGGFSFNELPPKEDGLQLHASPNSTTILDSSSSSKVAFVSIKRPKLSTQQDLSPLAASVSENRETKNDKEEDTLLNLLSQGIPRNSGF 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1446 1004 MobiDBLite consensus disorder prediction 641 673 - -
Lele01g1446 1004 MobiDBLite consensus disorder prediction 714 739 - -
Lele01g1446 1004 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 515 IPR027417 -
Lele01g1446 1004 MobiDBLite consensus disorder prediction 14 54 - -
Lele01g1446 1004 Coils Coil 533 580 - -
Lele01g1446 1004 MobiDBLite consensus disorder prediction 601 673 - -
Lele01g1446 1004 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 112 713 - -
Lele01g1446 1004 CDD SF2_C_DEAD 372 504 - -
Lele01g1446 1004 Gene3D - 111 362 IPR027417 -
Lele01g1446 1004 CDD DEADc_DDX27 166 361 - -
Lele01g1446 1004 Coils Coil 619 639 - -
Lele01g1446 1004 MobiDBLite consensus disorder prediction 855 884 - -
Lele01g1446 1004 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 390 534 IPR001650 -
Lele01g1446 1004 Gene3D - 371 560 IPR027417 -
Lele01g1446 1004 SMART ultradead3 174 375 IPR014001 -
Lele01g1446 1004 MobiDBLite consensus disorder prediction 885 906 - -
Lele01g1446 1004 MobiDBLite consensus disorder prediction 700 753 - -
Lele01g1446 1004 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 155 183 IPR014014 GO:0003724
Lele01g1446 1004 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 306 314 IPR000629 -
Lele01g1446 1004 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 360 IPR014001 -
Lele01g1446 1004 SMART helicmild6 410 495 IPR001650 -
Lele01g1446 1004 MobiDBLite consensus disorder prediction 934 977 - -
Lele01g1446 1004 MobiDBLite consensus disorder prediction 855 1004 - -
Lele01g1446 1004 MobiDBLite consensus disorder prediction 1 144 - -
Lele01g1446 1004 Pfam DEAD/DEAH box helicase 179 349 IPR011545 GO:0003676|GO:0005524
Lele01g1446 1004 Pfam Helicase conserved C-terminal domain 391 495 IPR001650 -
Lele01g1446 1004 MobiDBLite consensus disorder prediction 74 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1446 Lele-ChrLele01 8922725 8936442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1446 143 512 Eukaryotic Initiation Factors Gene Family AT3G13920 33.512 5.64e-51 184