Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1427 ATGAAGATAGAAGAAGCAATATTCGTAATGAGGTTTAAGGAGATTATTTCTGTGTGTGTTGCAATGTCCATGACAATTCTGGAACGAGTCGTTTTTGCTGCATTCATCTGCATTCTCGCTCTAGGAGGGTCAATAATGGGGACAACAGTGGGAGGGATGAAGGGACAGAGATCAGAAGCAGGGATACTTGATGGAGCTGGGAAAGGAGCAGTGTCAGGAGCCATTGCTGCTCTTGAATTGCTTGATCATTTTGTTGCTGATAATCATCATGAACCTATATCAAAGGTTGCCCTATTAAGCAGTTTATTCAATGGGAAGGTCCTAATGGAATGGGTATATTCAGCCTATCAATGGCATATTGGGATACCTGAAACAATCTACAGAGAAGTATCAGATATTTATGATATGAGAGGAGCGCCAGGGTTGTCCCACAAATTGATTCAAACCCTCCCTTTGCATCAATTCAACTCCACACAAATGTTGGCTTCATACAATGAATCCTGCTGCTCCATTTGCTTCCAGGAGTTTGAGGATGGAGATGTGATAAGGAGGCTTCCAAAATGTGACCATATTTATCACTTCCACTGTATAGATAAATGGCTCATCCAACAAGGATCATGCCCTATGTGTAGAACTTATGTTCTTGACAGTGATTTTGATGTCTAG 666 0.4144 MKIEEAIFVMRFKEIISVCVAMSMTILERVVFAAFICILALGGSIMGTTVGGMKGQRSEAGILDGAGKGAVSGAIAALELLDHFVADNHHEPISKVALLSSLFNGKVLMEWVYSAYQWHIGIPETIYREVSDIYDMRGAPGLSHKLIQTLPLHQFNSTQMLASYNESCCSICFQEFEDGDVIRRLPKCDHIYHFHCIDKWLIQQGSCPMCRTYVLDSDFDV 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1427 221 SMART ring_2 169 210 IPR001841 -
Lele01g1427 221 Pfam Ring finger domain 169 211 IPR001841 -
Lele01g1427 221 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 17 212 IPR044523 -
Lele01g1427 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 215 IPR013083 -
Lele01g1427 221 ProSiteProfiles Zinc finger RING-type profile. 169 211 IPR001841 -
Lele01g1427 221 CDD RING-H2_PA-TM-RING 168 211 - -
Lele01g1427 221 SUPERFAMILY RING/U-box 157 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1427 Lele-ChrLele01 8787909 8790030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1427 26 214 C3H Transcription Factor Family AT5G66070 30.151 9.06e-32 114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1427 01 8787909 8790030 Lele01g1427 01 8787909 8790030 ECH
Lele01g1427 01 8787909 8790030 Lele03g1429 03 8680265 8683472 hybridization
Lele01g1427 01 8787909 8790030 Lele04g1698 04 21604021 21606266 hybridization