Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1421 ATGGCAAACATGAATAGTCATAACGACGATGAGAATAATGAACATGGGTTACCTTCAATCACCGCCGTTGGTGAAGGAGGTGCCGGTGGTGAGGGTGCCGGTGAGGCAGCGGCAGCAGCGGAGGAGGTTGTTCTCAAGAAGGGTCCATGGACGGCGGCGGAGGATGCTGTGCTTATTGATTATGTGACGAAGCATGGTGAAGGGAATTGGAATGCAGTGCAGAGGAATACGGGGTTGGCTCGATGTGGCAAGAGCTGTAGGTTGAGATGGACGAACCATTTGCGTCCAAATCTGAAGAAGGGCGCTTTCTCTCCTGAAGAAGAGAAGCTCATTCTTGAGCTTCATGCTCAGTTCGGCAACAAATGGGCTCGAATGGCCACTCTTTTACCTGGGCGAACAGACAATGAAATCAAGAACTACTGGAACACTAGGGTGAAGCGCAGGAAAAGACAAGGCCTACCACTTTATTTCAGTGATTCTGATCAGGCAACCACTTCTGCAGCACCGGCCACCTCGGGTACAGGACCAGTTACTGGATCCACTGCCACAAAATTGGATTATTATAATCAGAACCGCTATCCTCTGTCTTCACTCCATACAGGATCCTCTTATTCTACTCATACCCCTTTCTTGGACCCCAATTCTCTTTCTTCTTCCTCCGCCTCCTTTATTACCTTCCCCTATCAACAGCCTACTTCCTCTTCATTACACATCACCCCACTCAATTCCAAGCGTTGCCGTACCACTTTTTCCCTCCCAGATGCACCTTTAACTACCCCATTGGTGGATCTTGATGGACTCAACTTTCCATCCCAATTTAATTCAAGTTCATGTCAAATTTCCCAGACCCCATTAGAGTTATCATCTTCTGTTCCTGGGTTTCCAAGCCCATCTTCCATTTTGTCAACCAAAATGGAGCTCCCTTCAAACCAATTTTTACAATCCAATAATGACCTCCTAGTGGGTGATCTTCTTCTGGAAGCTCAATTATTGGTTTCTGGCCAGAATTTGAAGAAACGAACCTACTCGAGTTTTAGTGAAGGAAATGATTTCTTAGATGGATATACTGGCTTGGACGATCTGGCTCAAAGCTCTGTTTACTGGTCTTCAGGACTGAAACCAAAGTCAGAACCATCAGACATGAATGAGCTTTCCACACTGATCTCTGGAATGCCTTCCACCATTCAGGTTCCTGAATGGCACAATGCCATTGCTTCACAAGCCTCCAACACTGTTCAATCTTCTGGTGGTATCATGGCGGATGATAATTTTGATCTTGATTTCAAGCCTATGGATTCATTGATTCCTGTCAACACAACAGCAAACCCTAATGAAAACCCTGGCTTCTTCTCATGGGACCCCTTACCTGGTCTCTGCTGA 1380 0.4638 MANMNSHNDDENNEHGLPSITAVGEGGAGGEGAGEAAAAAEEVVLKKGPWTAAEDAVLIDYVTKHGEGNWNAVQRNTGLARCGKSCRLRWTNHLRPNLKKGAFSPEEEKLILELHAQFGNKWARMATLLPGRTDNEIKNYWNTRVKRRKRQGLPLYFSDSDQATTSAAPATSGTGPVTGSTATKLDYYNQNRYPLSSLHTGSSYSTHTPFLDPNSLSSSSASFITFPYQQPTSSSLHITPLNSKRCRTTFSLPDAPLTTPLVDLDGLNFPSQFNSSSCQISQTPLELSSSVPGFPSPSSILSTKMELPSNQFLQSNNDLLVGDLLLEAQLLVSGQNLKKRTYSSFSEGNDFLDGYTGLDDLAQSSVYWSSGLKPKSEPSDMNELSTLISGMPSTIQVPEWHNAIASQASNTVQSSGGIMADDNFDLDFKPMDSLIPVNTTANPNENPGFFSWDPLPGLC 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1421 459 MobiDBLite consensus disorder prediction 1 35 - -
Lele01g1421 459 SMART sant 99 147 IPR001005 -
Lele01g1421 459 SMART sant 46 96 IPR001005 -
Lele01g1421 459 Gene3D - 46 99 - -
Lele01g1421 459 FunFam Transcription factor GAMYB 102 148 - -
Lele01g1421 459 Pfam Myb-like DNA-binding domain 47 94 IPR001005 -
Lele01g1421 459 Pfam Myb-like DNA-binding domain 100 143 IPR001005 -
Lele01g1421 459 ProSiteProfiles Myb-like domain profile. 95 145 IPR001005 -
Lele01g1421 459 SUPERFAMILY Homeodomain-like 46 141 IPR009057 -
Lele01g1421 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 94 IPR017930 -
Lele01g1421 459 CDD SANT 49 94 IPR001005 -
Lele01g1421 459 FunFam MYB-related transcription factor 46 99 - -
Lele01g1421 459 ProSiteProfiles Myb-like domain profile. 42 94 IPR001005 -
Lele01g1421 459 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 26 409 - -
Lele01g1421 459 Gene3D - 102 148 - -
Lele01g1421 459 CDD SANT 102 143 IPR001005 -
Lele01g1421 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 149 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1421 Lele-ChrLele01 8742945 8745449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1421 20 312 MYB Transcription Factor Family AT4G26930 45.051 2.28e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele01g1421 Myb_DNA-binding 1.5e-12 CL0123