LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele01g1396	ATGAGGAGGGTTAGAGGAGCCGCAGCTGTCAAACAGGCGGCGGTTGAACTCCATGGATCCGGTCCAAGGGCCGTTTTAAAAGAGCCCAGATACCGGGGCGTGAGGAAGAGACCGTGGGGTAGATTCGCCGCCGAGATCAGAGACCCCTTGAAGAAAGCTCGTGTCTGGCTAGGCACCTTTGATTCCGCTGAGGAAGCCGCTCGAGCCTACGACGCTGCGGCGATAGCTCTCCGTGGACCTAAGGCCAAGATCAATTTCCCCATTTCTTCTTCATTTTCGCCGTTCTGTTACGCCACCACCAACCCCAACGTCAACGACGATGTCTTGGATCACCGGTTGTACGTGAACAACGCTTTCCAGGAGCACCAGATTAACCCTCAGAGACCAGCCACCAGTAGCATGAGTAGCACATCTTTCAGCGGGCCACGGCCACCGTCTTCGACGGCTCCGGCAGCAGTAAACCGGAGATACCCCCGGACGCCGCCAGTCATGCCGGAGGATTGCCATAGCGACTGCGATTCCTCGTCTTCAGTGATCGATGGCGATGGAGACGTCGAGGTCGCCGATTTAGCTTCCTCGTCGTTCCGTCAACCCTTACCTTTCGATCTCAACTTCCCACCGTTGGATGTCCCGAACGTGGCTGGTGACGATCTTCACTGTACCGCTCTCTGCCTCTGA	678	0.5708	MRRVRGAAAVKQAAVELHGSGPRAVLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAAAIALRGPKAKINFPISSSFSPFCYATTNPNVNDDVLDHRLYVNNAFQEHQINPQRPATSSMSSTSFSGPRPPSSTAPAAVNRRYPRTPPVMPEDCHSDCDSSSSVIDGDGDVEVADLASSSFRQPLPFDLNFPPLDVPNVAGDDLHCTALCL	225

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele01g1396	225	Pfam	AP2 domain	29	79	IPR001471	GO:0003700\|GO:0006355
	Lele01g1396	225	CDD	AP2	29	89	IPR001471	GO:0003700\|GO:0006355
	Lele01g1396	225	PRINTS	Ethylene responsive element binding protein signature	31	42	IPR001471	GO:0003700\|GO:0006355
	Lele01g1396	225	PRINTS	Ethylene responsive element binding protein signature	53	69	IPR001471	GO:0003700\|GO:0006355
	Lele01g1396	225	MobiDBLite	consensus disorder prediction	121	147	-	-
	Lele01g1396	225	Gene3D	AP2/ERF domain	30	89	IPR036955	GO:0003700\|GO:0006355
	Lele01g1396	225	SMART	rav1_2	30	93	IPR001471	GO:0003700\|GO:0006355
	Lele01g1396	225	ProSiteProfiles	AP2/ERF domain profile.	30	87	IPR001471	GO:0003700\|GO:0006355
	Lele01g1396	225	SUPERFAMILY	DNA-binding domain	30	89	IPR016177	GO:0003677
	Lele01g1396	225	MobiDBLite	consensus disorder prediction	121	181	-	-
	Lele01g1396	225	FunFam	Ethylene-responsive transcription factor 2	30	88	-	-
	Lele01g1396	225	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	20	181	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele01g1396	Lele-ChrLele01	8567478	8568155	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele01g1396	1	225	AP2-EREBP Transcription Factor Family	AT1G50640	54.468	3.26e-53	169

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele01g1396		AP2	7.5e-16	CL0081