Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1395 ATGGCTAGCGAAGAGGAGAGACATCTGGAGACTCAACTAGAGCTTCAATTGCAGGAACAGAGGGATTCACTCTCTGCACTTAATGAAGCCTTGGTCTCTGATCCATCCAATGCCGAGCTTCTCGCGGTTCATGAGGAGCTTGTTCAGGCAATCAAAGATGCAGAGGAAGGGCTTCTTCACTTAAAGCGTACTCGATTATTGCATGAAGCAGATTCAGTGCTGAATAGATCCAATCTTTCTGCTCAATCAGAGACAGTTGATTCACTTGACCCTGCAGATGTTGAACCAGAACCTCTAGAGGAACCACATTATTCTGTTGGATCTAAATGTAGATTCCGTCACACCGATGGGCGTTGGTACAATGGTCAAGTAGTGCGGTTAAATAGTTCTTCAGCAAAAATTTCATTCCTTATGCCTACGTCTGAGAATATGCTGATGTGCAAGTTTTTTCGGCAACAGAGATGTCGGTTTGGTACTAACTGTCGTCTATCACATGGTATTGATGTTCCACTGTCTTCCCTCAGAAAATATGTTCCTACCATCTGGAAGCAGTCCCTTGTTGGTTCAAGTATATGGGCAGTCTCAGATGTTAATGCTGGCATTTGGAAGGAAGCTGAGCTTGAATCCTGGGATGAAGGGCTTGGAGTTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCTGTGACGTTAGGAGCAGAAGCTATGGCATTACCTGAATGTGCAGAAGTGAGCGATGAAGAGAGTGATTCCAGCTCGGAACAGTCTGATTTTAGTGACTATGAAGAAGATGGCCCACAAGGTATAGGCTTTCTGGAAAGCACCAACCTGCAGCGGGGTATTCAGACTGACACTGTTATATTTGCAAAGTGGGAGAATCACACCAGGGGTGTAGCTTCCAAAATGATGGCTAATATGGGTTACCGGGAAGGTATGGGTCTAGGTGTTTCTGGTCAAGGAATGCTTAATCCCATCCCAGTGAAGGCCCTCCCACCAAAGCAATCCTTAGATCATGCTCTTGAATCTCATAAAGATAAAGGAGAAGAGAGCAAAATCAATCAAGGTAAGAAACGAAGTAGAGGTGGTAAGAGAAAACGCGATAAGAAATTTGCAGAGGCCATTCGGGTAGCAAAAGAAGAGGAGGAATCAGTATCGGATGTCTTCGCACTAATAAATAATCAGCTGGCAGTGCATAGTGCAGCTATGAATGGTGGATCAGTGAAGAAGCAGCAAAGTAAAGGTTCGGGAGAAGGTAAAAAGGTTGATAGGCGGGCTTTGATTGCTTATGAGGACGAGGTAAAGGACTTGAGGATTCGGGTTGAGAAGCTTGAAGAAATGGTAAATAGAAACAAGAAAGAGAAGGTAGTTTACGAGGCCGCCATGAGAAAGTTAATCGAAACCCGCAAGGCTTTAGCAGAGGCAGAAGCAGCCCATGTCTCCGCCTCAAACGCAGTTGTTACCAAAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG 1491 0.4467 MASEEERHLETQLELQLQEQRDSLSALNEALVSDPSNAELLAVHEELVQAIKDAEEGLLHLKRTRLLHEADSVLNRSNLSAQSETVDSLDPADVEPEPLEEPHYSVGSKCRFRHTDGRWYNGQVVRLNSSSAKISFLMPTSENMLMCKFFRQQRCRFGTNCRLSHGIDVPLSSLRKYVPTIWKQSLVGSSIWAVSDVNAGIWKEAELESWDEGLGVGQVVFRDDGSSVTLGAEAMALPECAEVSDEESDSSSEQSDFSDYEEDGPQGIGFLESTNLQRGIQTDTVIFAKWENHTRGVASKMMANMGYREGMGLGVSGQGMLNPIPVKALPPKQSLDHALESHKDKGEESKINQGKKRSRGGKRKRDKKFAEAIRVAKEEEESVSDVFALINNQLAVHSAAMNGGSVKKQQSKGSGEGKKVDRRALIAYEDEVKDLRIRVEKLEEMVNRNKKEKVVYEAAMRKLIETRKALAEAEAAHVSASNAVVTKEKEKRWLKF 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1395 496 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Lele01g1395 496 Coils Coil 1 30 - -
Lele01g1395 496 SMART G-patch_5 292 338 IPR000467 GO:0003676
Lele01g1395 496 Pfam G-patch domain 294 335 IPR000467 GO:0003676
Lele01g1395 496 Gene3D - 106 178 - -
Lele01g1395 496 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 496 - -
Lele01g1395 496 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Lele01g1395 496 MobiDBLite consensus disorder prediction 78 105 - -
Lele01g1395 496 ProSiteProfiles G-patch domain profile. 294 340 IPR000467 GO:0003676
Lele01g1395 496 MobiDBLite consensus disorder prediction 243 274 - -
Lele01g1395 496 MobiDBLite consensus disorder prediction 338 355 - -
Lele01g1395 496 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Lele01g1395 496 Coils Coil 425 476 - -
Lele01g1395 496 MobiDBLite consensus disorder prediction 338 367 - -
Lele01g1395 496 MobiDBLite consensus disorder prediction 243 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1395 Lele-ChrLele01 8559401 8563455 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele01g1395 G-patch 1.3e-11 CL0449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1395 01 8559401 8563455 Lele03g1401 03 8462822 8471286 hybridization
Lele01g1395 01 8559401 8563455 Lele04g1668 04 21410392 21414411 hybridization