Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1379 ATGGAATTGGCGATGGTTTCTGAGGTAACGGAACCGCCGGAGAACACGCGATCTGAGGGCTTGCCGGTGAAAAGGCCGGTTGAGAATGGTGGGGCTGAGGAATTGGCCAAGAAGCCTAAGGTTGAATCAGCTGCTGAAGCTTTGTCTAGCGGGGAGTTGAAGAGAGTGGCGGAGATTGTGCTGGTTTTGTCGACGATGGCGGCAATGCGAGGTGGGAAGAAGCCCACTAGTGTGGAGATTGAGTTGATGAAGGAGGCAAGGATGAAGTTGGTGGAGTTATGTCAAGGGATGGCCCCCAAGGATATTGTGGCGAGGGAATCTGTGGGGACAGTGATGGAGGATCTGGGATTGAACGGGAAGATTAAAGATCAGAGATTAGGGTTTCAAACTCCAAAGATGTCTATAACCGAAAGGTTCGCACTCTCCAAGATGAAGATGGAAGAATCAAAGAAGTTTCCTGAACATTCTGCTCCATCTACTTCGCAGCCATTGCAAACAAGCATGGGCGGTGGAATGGTTGAAAATCGTATGCCATCTCATACTGTTCGAATGTTTCCCATGGACAAATCAAGCCACACAGGACTCTCTCCTTCTGGTACCATAACTTCTCCTGTGATTCATGTTTCTGCAGGATCATCTGCTGCTTTGCAATATCAATCAACTACTAGTGAAGTAAAACCGCCTATAGTTTCTGGTGGAATGTCTAGCAGTCACTTTGGTAGAAATTCGTCTTCATTAGCATTGCCTAAAGTTGAACAACCACAGTTCAAAGTTGATGGAGGATCAAGTGGGCCTTATTCGTTGCATGCTCAAGTAAGCTCTTCATCAAACCAACCCTTGGTGAATGCTTCAACATGGTCAACGCAAACTCAAACTCAAACTCAATCTGCTTTCTTAGCTAGAAGTACACCAGAAAACAAAGGGACTGGACATAACCCTGTCAAGGTTGAGGGAATTGGTGACCTAACTGGGCCCAGAGGTGCTTCACAAATAGCAAGGGATCAGGGCTATAGACCCTTAGTAACTCAAACAATGGCTGGAAATTTGTCTAGCTTGCACCAGCCATTGCAGAGCATGAACATCGTTCAGCCTCCTTCAGTTCCTAATAATCATGCTGAAATTGCAAAGATTATCCAGAAAATTTTACTACCAAAGCTTCCCGAGCATCCCACATGGACTCCTCCATCAAGGGATTATATGAACAAGGCATTTACTTGCCAGATGTGTGATCTCACTGTTAATGAAGTGGATACTGTGCTTCTTTGTGATGCTTGTGAAAAAGGGTTTCACTTGAAGTGTTTGCAGCCATCACTTCTGAGAGGAATTCCTAGAGGTGAGTGGCACTGCATGAGGTGCTTGACATTAAGCGGTGGAAAGCCTTTGGCTCCAAAATATGGTCGTGTCATGAGGTCCGCAAACACTCCACCAAAACTTCCCTCTAACACAGGTGGAGTCCAACCATCCTTAGAGAAGAAAACTGGAGTTGCAGCTCCAAAGGTCAGCTCACAGGAGTTAACAATAAATGGAGGCTCTGTTTCAACTGATGGCACTAGTAACAATAAAAATGCTGAGCTTCAGTCTGTCTCAAAGATGCCTGATACAAAAGAAATGCAAGATAACACTCATTCATCCAGCAGCAAACACATGGATGAGAAGCCTGACCCAAATATCTCAATAAAATCCCTTAGTTCAGCTTCTAGTCCTTCTGTTGTCTTTCCAGGTGAAAGTTCTGCTGAACAAATAATTTCTGAGCCATCTACGTCTAAAGAGAGAACCTTTGCTTCAGAATCAGAAGTGCTTCCTCAATTAACTGAGTCAGCTAAACCTAACAATTTGCAATTTTCAAAAAATGTACAAGTTGAACTGACACCACTACCAAACAATGTTGAAGTTTCATTATATAAACATGTTGGCAATAGTTTGACAGATAATAACGGAAAGGAATCTCATGGGGGAGAAAATTTAATATATGATATCAAACGCGAGGACCAATATGTTGCACTAGCAAATTCTGATAAAAGTTCTGGAACTCATGCTGAAGGTAGACCATGTACTGCATCATCTTCAGATGGCTTACATGCAGTAGAGTGGGTTGGTGATATTGTACAACTTGTTGATGAGAAAAGGTTTTACCAATCTTGTCGTGTTAATGGAGTTACATATAGGTTGCAGGGTCATGCTCTTTTTAAATCCAGTCATGGCAAGTTAATTCCATCTAAACTGCAGTCTATGTTTGAAGATAGCAAAACTGGGTTGAAGTGGGTAAATGTGACAAAGTGCTACTTTCCTGGCGATTTACCAGGGAATATCCCTCACCCATGTGTATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTGGCTCCATTCAAGGACCCTGTGAAGTCCTCCCGTCTCTTAAATTTCAACAAGAAAAAAATAAACGAAGAGGGTTAGAACCTGAGGAAAGTGCTAGACTTCAGCCAATTTTCCTATGCAGATGGTTCTATGATGGAGTCAAAAAATTATTTCAGCCTGTTATCAGTTGA 2544 0.4292 MELAMVSEVTEPPENTRSEGLPVKRPVENGGAEELAKKPKVESAAEALSSGELKRVAEIVLVLSTMAAMRGGKKPTSVEIELMKEARMKLVELCQGMAPKDIVARESVGTVMEDLGLNGKIKDQRLGFQTPKMSITERFALSKMKMEESKKFPEHSAPSTSQPLQTSMGGGMVENRMPSHTVRMFPMDKSSHTGLSPSGTITSPVIHVSAGSSAALQYQSTTSEVKPPIVSGGMSSSHFGRNSSSLALPKVEQPQFKVDGGSSGPYSLHAQVSSSSNQPLVNASTWSTQTQTQTQSAFLARSTPENKGTGHNPVKVEGIGDLTGPRGASQIARDQGYRPLVTQTMAGNLSSLHQPLQSMNIVQPPSVPNNHAEIAKIIQKILLPKLPEHPTWTPPSRDYMNKAFTCQMCDLTVNEVDTVLLCDACEKGFHLKCLQPSLLRGIPRGEWHCMRCLTLSGGKPLAPKYGRVMRSANTPPKLPSNTGGVQPSLEKKTGVAAPKVSSQELTINGGSVSTDGTSNNKNAELQSVSKMPDTKEMQDNTHSSSSKHMDEKPDPNISIKSLSSASSPSVVFPGESSAEQIISEPSTSKERTFASESEVLPQLTESAKPNNLQFSKNVQVELTPLPNNVEVSLYKHVGNSLTDNNGKESHGGENLIYDIKREDQYVALANSDKSSGTHAEGRPCTASSSDGLHAVEWVGDIVQLVDEKRFYQSCRVNGVTYRLQGHALFKSSHGKLIPSKLQSMFEDSKTGLKWVNVTKCYFPGDLPGNIPHPCVSEVNEVYESNSDRTEMAGSIQGPCEVLPSLKFQQEKNKRRGLEPEESARLQPIFLCRWFYDGVKKLFQPVIS 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1379 847 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 467 IPR013083 -
Lele01g1379 847 MobiDBLite consensus disorder prediction 466 595 - -
Lele01g1379 847 MobiDBLite consensus disorder prediction 302 323 - -
Lele01g1379 847 MobiDBLite consensus disorder prediction 474 488 - -
Lele01g1379 847 ProSitePatterns Zinc finger PHD-type signature. 406 452 IPR019786 -
Lele01g1379 847 SUPERFAMILY FYVE/PHD zinc finger 396 459 IPR011011 -
Lele01g1379 847 MobiDBLite consensus disorder prediction 557 595 - -
Lele01g1379 847 MobiDBLite consensus disorder prediction 155 169 - -
Lele01g1379 847 MobiDBLite consensus disorder prediction 499 534 - -
Lele01g1379 847 ProSiteProfiles Zinc finger PHD-type profile. 403 455 IPR019787 -
Lele01g1379 847 Gene3D - 698 846 IPR043151 -
Lele01g1379 847 MobiDBLite consensus disorder prediction 151 170 - -
Lele01g1379 847 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 18 845 - -
Lele01g1379 847 MobiDBLite consensus disorder prediction 535 555 - -
Lele01g1379 847 Pfam PHD-finger 406 453 IPR019787 -
Lele01g1379 847 SMART PHD_3 405 453 IPR001965 -
Lele01g1379 847 MobiDBLite consensus disorder prediction 1 41 - -
Lele01g1379 847 ProSiteProfiles BAH domain profile. 719 846 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1379 Lele-ChrLele01 8481746 8486062 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1379 416 497 C2H2 Transcription Factor Family AT3G01460 29.885 6.03e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele01g1379 PHD 1e-08 CL0390