Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1378 ATGGCCGCTGAGAGGACGGAACTGCCAAAGGAGGCGCAATCCGAATGCTTATCGGTGAAAAGGCTAACTGAGAATGGTGGTGGATGGGAAGAAGCTATGGAGACTGTGATTCAGGATCTTGGACTGAAGACGAAGATTAAAGTTCAGAGACTAACGACGGAACCTGGAAATTTGTCTATCACGCACCACCAGCTATTGCAGAGCAAGAAAATTATTGTCCAGAAATTATTGAAACCTCTGCTTCCTGAGCATCCCATGTGGACTCTTCCCTCGAGGGATTATATGAATAAGTGCTTGATTTTAAGTGGTGAAAAGCCTTTACCTCCAAAATATGGTCGTGTCGTGAGGTTCTTGAACACTAAATCAAAGCTACCCTCTAACACAGATAAGAACACTGGTGTTGCAGTTCCAGAGCTTGCTAAGCACCTCACATGGCTACCTCCATCAAGGGATTATATGAATCGGGCATTTACTTGCCAGATTTGTGATCTTACTGTCTACGAAGTGGACACTGTGCTTCTTTGTGATGCTTGTGAAAATGGGTTTCACTTGAAGTGTTTGCAATTGCAGCCATCATCATCACTCTTGAGAGGAATACCTAGAGGTGAGTGGCATTGCATGAGGTGCTTAAGTGGTGAAAAGCCTATGCATTCAAAATACGGTCGTATCATAAGGTTCTCGAAAACTCCACCAAAACTATGCTCTAACGCAAGTGGAGTCCAGCCATACTTAGAGAAGAAAACTGGAGTTGCAGTTCCAAAAGTCAGCTCACAGGAGTTATCAACAAATAGTTGCTCTGGTTCAACCGATTCCTACTACCAACAACAAAAACCACTTCACTTCTCTTCAATGGCAGATCAGAAAAGTTCTGTAACACGTACTGAATGGAGACCAAATACTGCCTTGTATTCAGATGGCTTACATGCAGTGGAATTGGTTGGCGATCTTGTACAACTTGTTTTATTTCCTTTTATTACTTTTTTTTAG 987 0.4265 MAAERTELPKEAQSECLSVKRLTENGGGWEEAMETVIQDLGLKTKIKVQRLTTEPGNLSITHHQLLQSKKIIVQKLLKPLLPEHPMWTLPSRDYMNKCLILSGEKPLPPKYGRVVRFLNTKSKLPSNTDKNTGVAVPELAKHLTWLPPSRDYMNRAFTCQICDLTVYEVDTVLLCDACENGFHLKCLQLQPSSSLLRGIPRGEWHCMRCLSGEKPMHSKYGRIIRFSKTPPKLCSNASGVQPYLEKKTGVAVPKVSSQELSTNSCSGSTDSYYQQQKPLHFSSMADQKSSVTRTEWRPNTALYSDGLHAVELVGDLVQLVLFPFITFF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1378 328 Pfam PHD-finger 159 210 IPR019787 -
Lele01g1378 328 SMART PHD_3 158 210 IPR001965 -
Lele01g1378 328 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 72 99 - -
Lele01g1378 328 ProSiteProfiles Zinc finger PHD-type profile. 156 212 IPR019787 -
Lele01g1378 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 228 IPR013083 -
Lele01g1378 328 ProSitePatterns Zinc finger PHD-type signature. 159 209 IPR019786 -
Lele01g1378 328 SUPERFAMILY FYVE/PHD zinc finger 149 217 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1378 Lele-ChrLele01 8477516 8479668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1378 154 312 C2H2 Transcription Factor Family AT3G01460 25.455 2.44e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele01g1378 PHD 2.1e-08 CL0390