Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1375 ATGAGCTCCTTCGTTGCTTCGCTTCTTCTACCTAAGAAATCATTTCTTGCTGTGGTGCTCATGCTAGCAGTCGCCTCCATGGCAGCACACACTCGTTCTCCTTCTCCATCTCCTTCTCCTTCTTCTTACTTCACTGCCCTCCTATTTCCTCTGCGTTTAACATTCCGAAAGAGTCAATTGAAGTCATTGCGTAGAGCATTGGCATCTACAATTGGTCCCCTGATGTCGCTCTCGCTCCTGATGTGGAGTATAGGGTTCGCGAAGTTATGCAGTTGGGAGCCTATCAAACTGTGGTGGTACACCTACAAAAGGCTCTTATTTGTTATCGTAAAGCCGATATGTGGTTTCACCTGTAACGATCCTCTGCGGTTCAAAAGAGCTGCTGGACACGAGGATTTGTTCTACGTTGATGACAAAGATGTTGATTTTAAGGATGTGATTGAAGCAGCACTGCCAAAAGCACCTCTTGATACATCAGTTACCACTCATTGGCTGGCAATTGAAGCTCCCTCTGAAACAAGAAAATCTAACTATAAGGAAGAACTTCCTGTTGATATTAAATTACCTGTTAGACATTTACTTTCAAGAGAGCTTCTGCCTTACGCAAAATCCTCACATACACATAGAGCCTTATGGAATGGACTATCTGATTATCACTGGGAACTCAGAAACTTCAGTGAAAACCTGGTTGCTTCAATATGCAAAAGGTGGGGGACCTTTTATCTTGAATTTGGGCATGTTTATCATAATCAGCCACGTGTGACAAAGGCATTGCTTCATGCTTTCTTGGACCCTACAAAATCTCTAACTCAACATTATGGTGCAATTAAAGGTAAAGCAGCTCTTGGATCCAGCATGGTTCTTATGCTTATACTTCCAAATCTTGAGGCATATCTGCTTCTTCTTGAACCAGAAATGCAACTTGAGAAGCAAAAAAACGCATTTAAGATGCATGAAGCGTGGCAATGTGCATCAGGCCAATGTATTCATGAACGGGCCAAAGTGTACAGCCGTATGCTCTCTCCTGCTTCTACTCGTGCTTTTTCAAGAGGCTATGGAAAAGTCACGACGGCAACACCAAGCAAATGTAAAGCCATCACAGACAATCTAATGCAGCAACCTCCACTGAAGAAAATTGCAACAGATGTTTCTGGGGTTTTGACGCCAATGAACTCCTTGCCGGTTGATGTGCAAATGCAAGGCACGCCAGGTGAAAACATTGTAGCAATGTAG 1233 0.4339 MSSFVASLLLPKKSFLAVVLMLAVASMAAHTRSPSPSPSPSSYFTALLFPLRLTFRKSQLKSLRRALASTIGPLMSLSLLMWSIGFAKLCSWEPIKLWWYTYKRLLFVIVKPICGFTCNDPLRFKRAAGHEDLFYVDDKDVDFKDVIEAALPKAPLDTSVTTHWLAIEAPSETRKSNYKEELPVDIKLPVRHLLSRELLPYAKSSHTHRALWNGLSDYHWELRNFSENLVASICKRWGTFYLEFGHVYHNQPRVTKALLHAFLDPTKSLTQHYGAIKGKAALGSSMVLMLILPNLEAYLLLLEPEMQLEKQKNAFKMHEAWQCASGQCIHERAKVYSRMLSPASTRAFSRGYGKVTTATPSKCKAITDNLMQQPPLKKIATDVSGVLTPMNSLPVDVQMQGTPGENIVAM 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1375 410 Gene3D - 187 318 IPR046344 GO:0006367
Lele01g1375 410 CDD TAF6C 216 323 IPR011442 GO:0006367
Lele01g1375 410 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 110 203 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Lele01g1375 410 Pfam TAF6 C-terminal HEAT repeat domain 216 295 IPR011442 GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1375 Lele-ChrLele01 8454751 8460801 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1375 01 8454751 8460801 Lele26g1557 26 12138729 12165058 CCT
Lele01g1375 01 8454751 8460801 Lele28g1549 28 12764668 12786204 CCT
Lele01g1375 01 8454751 8460801 Lele01g1375 01 8454751 8460801 ECH
Lele01g1375 01 8454751 8460801 Lele03g1386 03 8365550 8369882 hybridization
Lele01g1375 01 8454751 8460801 Lele04g1642 04 21244082 21248349 hybridization