Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1359 ATGGAATCAGATCTTGGCAAGCTTTTCATTGGAGGAATTTCTTGGGACACTGATGAAGAACGACTTAAAGAATATTTTGGGAAATATGGAGAGGTGATAGAAACTGTGATCATGAGAGATCGTGCCACAGGTCGTGCTCGAGGTTTTGGTTTTGTAGTGTTTTCTGATCCTTCTGTTGCAGAAAGAGTCACTATGGATAAGCACGCTATTGATGGCCGCATAGTTGAAGCAAAGAAAGCTGTTCCCAGGGATGATCAGCAGATGATAAACAGAACTTCTGGTACTGTCCAAGGCTCTCCTGGTCCTGGGCGTACAAAAAAGATTTTTGTTGGAGGTCTGCCTTCAAGCATCACTGAAAGTGAATTTAAGAAGTATTTTGATCAGTTTGGCACAATCAATGATGTTGTAGTAATGTATGATCACAACACCCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGATGCTGTGGACAGAGTTCTTTATAAAACATTCCATGAACTCAATGGAAAAATGGTTGAGGTCAAGAGGGCAGTTCCAAAAGAGCTTTACCCTGGATCCAGCCGAAGCCCGTTGTTAGGAACTAGTTTTGGTCTTAATAGGGCCAGTAACTACCTAAACAGTTATGCGCAGGGTTATAACATGAATCCAGTTGGAGGCTATGGGGTGAGGATGGATGGTAGGTTCAGTCCTCTTACAAGTGGTAGAAGTGGAATTTCCCCCTTTGGCACCAGTGGTTATGGAATGGGACTGAATCTTGATGCAGGGCTGAGTGCTGGATATGGAGGGACATCCAATTATGGAAGCAATCTCGGATATGGTCGGATGATTAGTCCTTTTTACAGTGGCAACTCAAGCAGACAAATAACTCCTATAGGCTATAATGCTGGTAACGGGAGAAGCGATTCTCTAATGAACTCACCTTCTCGAAATGTCTGGGGAAATGGTGGCCTAAATAATGCCAATAACCAAGTCATTGCTGGTGCTAGCTTGGGATCTGGAAGTGGTGCTTTTGGCGTTACAATTAAAAATAATGGTGCAAATTGGGGTCAATCCTTTCCAACACAGGCTGGAGTGGCTGCTTCCGGGTATACCACTGGGATTAATGTTTATGAAGGTGGAGACAACAGTTTTGGGTTAGGTGGTACAGGTTATGGAAGAAATGGTAGTGTAGGTGTGAATTCATCTTCTACATTTTCTGCTTCAGCTGGTGGTTATGAAGGATCCTATGGGGATTTATACCATAACGGTTCAGTTTACAATGACTCAACTTGGTGGTCTTCTGTTTCTGACCTAGATGGTTCTGGTTCATTTGGTTATGGACTTGGTGATATAGCCTCTGAGGATCCAGTAAAGAGTTCAGAGGGTTATATTGGAAGCTACAATGCTTCAAGCAGACAACCTAACAGAGGAATTGCTGCCTAG 1434 0.4331 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIETVIMRDRATGRARGFGFVVFSDPSVAERVTMDKHAIDGRIVEAKKAVPRDDQQMINRTSGTVQGSPGPGRTKKIFVGGLPSSITESEFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLYKTFHELNGKMVEVKRAVPKELYPGSSRSPLLGTSFGLNRASNYLNSYAQGYNMNPVGGYGVRMDGRFSPLTSGRSGISPFGTSGYGMGLNLDAGLSAGYGGTSNYGSNLGYGRMISPFYSGNSSRQITPIGYNAGNGRSDSLMNSPSRNVWGNGGLNNANNQVIAGASLGSGSGAFGVTIKNNGANWGQSFPTQAGVAASGYTTGINVYEGGDNSFGLGGTGYGRNGSVGVNSSSTFSASAGGYEGSYGDLYHNGSVYNDSTWWSSVSDLDGSGSFGYGLGDIASEDPVKSSEGYIGSYNASSRQPNRGIAA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1359 477 SUPERFAMILY RNA-binding domain, RBD 105 271 IPR035979 GO:0003676
Lele01g1359 477 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Lele01g1359 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Lele01g1359 477 Gene3D - 103 189 IPR012677 -
Lele01g1359 477 Gene3D - 6 88 IPR012677 -
Lele01g1359 477 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Lele01g1359 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Lele01g1359 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Lele01g1359 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 63 IPR000504 GO:0003723
Lele01g1359 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lele01g1359 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Lele01g1359 477 SMART rrm1_1 107 179 IPR000504 GO:0003723
Lele01g1359 477 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lele01g1359 477 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lele01g1359 477 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1359 Lele-ChrLele01 8352878 8355433 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1359 2 201 Eukaryotic Initiation Factors Gene Family AT2G36660 26.818 4.59e-15 75.9