Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1357 ATGAGAATTTTGACCCAAAATCGAGAACAGATGGAATCGGATCTTGGCAAGCTTTTCATTGGAGGAATTTCTTGGGACACTGATGAAGAACGACTTAAAGAATATTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGAGATCGCGTGACAGGCCGTGCTCGTGGTTTTGGTTTTGTAGTGTTTGCTGATCCTGCTGTTGCTGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCCCAGTTGAAGCAAAGAAAGCTGTTCCCAGGGATGATCAGCAGATGATAAACAGAACTTCTGGTAGTGTCCACGGCTCTCCTGGTCCTGGGCGTACAAAAAAGATTTTTGTTGGAGGTCTGCCTTCAAGCATCACTGAAAGTGAATTTAAGAAGTATTTTGATCAGTTTGGCACAATCAATGATGTTGTAGTAATGTATGATCACAACACCCAGAGGCCAAGAGGCTTTGGCTTCATCACCTATGATTCAGAAGATGCTGTGGACAGAGTTCTTTATAAAACATTCCATGAACTCAATGGAAAAATGGTTGAGGTGAAGAGGGCAGTTCCAAAAGAGCTTTCCCCTGGATCCAGCCGAAGCCCGTTGTTAGGAACTAGTTTTGGTTTTAATAGGGCCAGTAGCTACCTAAACAGTTATGTGCAGGGTTATAACGTGAGTCCGGTTGGAGGCTATGGGGTGAGGATGGATGGTAGGTTCAGTCCTCTTACAAGTGGTAGAAGTGGAATTTCCCCCTTTGGCACCAGCGGTTATGGAATGGGACTGAATCTGGATGCAGGACTGAGTGCAGGATATGGAGGGACTTCCAATTATGGAAGCAATCTCGGATATGGTCGGATGATTAGTCCTTTTTACAGTGGCAACTCAAGCAGATACACCACTCCTATAGGCTATAATGCTGGTAACGGGAGAAGCAATTATCTATTGAACTCAACTTCTCGAAATGTCTGGGGAAATGGTGGCCTAAGTAATGCCAATAACCAATTCAGTGCTGGTGCTAGCTTGGGATCTGGAAGTAGTGCTTTTGGCGTTTCAATTAAAAATAGTGGTGCAAATTGGGGCCAATCCTTTCCCACGCAGGGTGGAGGGGCCACTTCCGGGTATAGCACTGGGATTAATGTCTATGAAGGTGGAGACAACAGTTTTGGGTTAGGAGGTACAGGGTATGGAAGAAATGGTAGTGTAGGTATAAATTCATCTTCTACATTTTCTGCATCAGCTGGTGGTTGTGAGGGATCCTATGGGGATTTGTACCATAATAGTTCAGTTTACAGTGACTCAGCTTGGAGGTCTTCTACGTCTAATCCTGATAGTTCTGGTTCATTTGGTTATGGACTTGGTGGTATGGCCTCAGAGGACCCAGTAAAGACTTCAGAGGATTATATTGGAAGCTACAATGTTTCAAGCAGACAACCTAATAGAGGAATTGCGGCCTAG 1464 0.4447 MRILTQNREQMESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRVTGRARGFGFVVFADPAVAERVIMDKHIIDGRPVEAKKAVPRDDQQMINRTSGSVHGSPGPGRTKKIFVGGLPSSITESEFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLYKTFHELNGKMVEVKRAVPKELSPGSSRSPLLGTSFGFNRASSYLNSYVQGYNVSPVGGYGVRMDGRFSPLTSGRSGISPFGTSGYGMGLNLDAGLSAGYGGTSNYGSNLGYGRMISPFYSGNSSRYTTPIGYNAGNGRSNYLLNSTSRNVWGNGGLSNANNQFSAGASLGSGSSAFGVSIKNSGANWGQSFPTQGGGATSGYSTGINVYEGGDNSFGLGGTGYGRNGSVGINSSSTFSASAGGCEGSYGDLYHNSSVYSDSAWRSSTSNPDSSGSFGYGLGGMASEDPVKTSEDYIGSYNVSSRQPNRGIAA 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1357 487 SUPERFAMILY RNA-binding domain, RBD 9 114 IPR035979 GO:0003676
Lele01g1357 487 SMART rrm1_1 17 88 IPR000504 GO:0003723
Lele01g1357 487 SMART rrm1_1 117 189 IPR000504 GO:0003723
Lele01g1357 487 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 11 483 - -
Lele01g1357 487 Gene3D - 113 201 IPR012677 -
Lele01g1357 487 FunFam Heterogeneous nuclear ribonucleoprotein 1 113 200 - -
Lele01g1357 487 Gene3D - 16 98 IPR012677 -
Lele01g1357 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 85 IPR000504 GO:0003723
Lele01g1357 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 176 IPR000504 GO:0003723
Lele01g1357 487 SUPERFAMILY RNA-binding domain, RBD 115 268 IPR035979 GO:0003676
Lele01g1357 487 FunFam Heterogeneous nuclear ribonucleoprotein 1 15 97 - -
Lele01g1357 487 CDD RRM2_DAZAP1 114 193 IPR034131 GO:0003723
Lele01g1357 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Lele01g1357 487 CDD RRM1_hnRNPA_hnRNPD_like 18 88 - -
Lele01g1357 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 92 IPR000504 GO:0003723
Lele01g1357 487 MobiDBLite consensus disorder prediction 445 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1357 Lele-ChrLele01 8338637 8341387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1357 15 229 Eukaryotic Initiation Factors Gene Family AT2G36660 22.907 3.21e-06 47.8