Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1335 ATGGCGGACTCGGATAACGATTCTGGAGGGGCGCTGAACACGGGAGCCAATGCGAACAGTAGCGAATTGTCGCCAAGAGAGCAGGACAGGTTCCTACCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTACCGGCGAATGCGAAGATCTCGAAGGACACGAAGGAAACAGTGCAAGAGTGCGTATCGGAGTTCATCAGCTTCATCACCGGAGAGGCCTCCGATAAGTGCCAGAGGGAGAAGAGGAAGACCATCAACGGGGACGACTTACTCTGGGCGATGACCACGCTGGGATTTGAGGACTACGTGGAGCCACTCAAGATTTACTTGCAGAGGTTCAGGGAAATGGAGGGAGAGAAGATCGTGGTGGCGGCGCGTGAGAAAGAAGGAGGTGGCGCGTCGAATAGTGCATATGACGGCGGTGGCGGGGTGTACGGAGGTGGCGGAGGAGGTGGAATGGGAATGATGATGCATCAAGGGCACGTATACGGCTTTGGTGGGTTTCATCAAATGGGTGCAAGTGGTGGTCCTGTGATGGGTAAGAGCGGGCCAACTTATCCGGGTCCTGGATCTAATACCGGTAGACCCAGATAG 597 0.5544 MADSDNDSGGALNTGANANSSELSPREQDRFLPIANVSRIMKKALPANAKISKDTKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREMEGEKIVVAAREKEGGGASNSAYDGGGGVYGGGGGGGMGMMMHQGHVYGFGGFHQMGASGGPVMGKSGPTYPGPGSNTGRPR 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1335 198 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele01g1335 198 FunFam Nuclear transcription factor Y subunit B-3 20 141 - -
Lele01g1335 198 MobiDBLite consensus disorder prediction 1 28 - -
Lele01g1335 198 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Lele01g1335 198 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Lele01g1335 198 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Lele01g1335 198 SUPERFAMILY Histone-fold 28 127 IPR009072 GO:0046982
Lele01g1335 198 Gene3D Histone, subunit A 19 140 IPR009072 GO:0046982
Lele01g1335 198 MobiDBLite consensus disorder prediction 7 26 - -
Lele01g1335 198 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Lele01g1335 198 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 126 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele01g1335 198 MobiDBLite consensus disorder prediction 175 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1335 Lele-ChrLele01 8176209 8176805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1335 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.594 2.49e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele01g1335 CBFD_NFYB_HMF 3.1e-26 CL0012