Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1334 ATGGATGAAGGTGAGGGAGGGTACGGTGAGAGTGGGGATCCGATGGATCAGTTCCATCGCAACGAAGCGATATCAGCTGTAGCTGATGAGGGTTTTTTGGCCGAGGAGGACGACGATTACGAGGACCTTTATAACGACGTTAATGTCGGGGAAGGGTTTCTTCAGTCCTTAAGAAAGAACGAGGATTCCGGGTTTCGGAATGAGGAGGTTGAGGAGAAAAAGACCCAATCAGCTGCTGTGCCGCCGGAATCTGCTGGTGTTTCTATCCCAGGCGTCGGTGTCGGTAGTGGTGGTAGTACTAGTGGTGAGGCTGGCGATTCGGGGGTTATGGATGCTGCGTCTAGGGTTCCAGGGCGAGCAGATGGGATTCAAAATCAAGGTTTTAGAGGGAATGAGATGGGTTTGAAAGGTAGTGGTGGATCAGGTGCCCCTATGGGTGGTGGAGGAGGGATGAGGGTTGAATTAGGGCAACAACCGAGCAAGTTGAATGAGATGGAGGAGCAGAGTGCTAATAACAGCGCAGGAGTACAAGGCATGGGCCAGCAACCTCATGGTGGAGTTGTTGGGAATGTTGGAAATGAGAATTTGATGAGGCAGGGTGGTGGAGGAGGAAATCTCAATAGGGCTGGTGGCAATGGGGTTGGGAATAATGTGAGTGCTGTCAATGTCGTCAATACTGGAGGGGGAACTGCTATTCCAGGTGGTGGTGGTACTGGAAGTGGTGGTGGGGGCACCATTTTATTTGTTGGTGATTTACACTGGTGGACTACTGATGCTGAGTTGGAGGCAGAACTCTGTAGGTACGGGCCAGTGAAGGAGGTGAAATTTTTTGATGAGAAGGCTAGTGGAAAGTCAAAAGGGTATTGCCAGGTTGAGTTTTATGATCCCTCTGCTGCATCTGCCTGTAAAGAACAAATGAATGGGTACATGTTTAATGGGCGACCATGCGTTGTTGCTTTTGCCTCTCCTTTTACCGTTAAGAGAATGGGAGAGGCTCAGGTGAGCAGAAATCAACAGATGACCCAATCTGCTGCTTCTCAGACAAGGAGAGGACCTGCTGATTCAGGGGCTAAGACGGGTGGGAGTAACATTACCACTGGTGGAAACTACCAAGGTGGAGATGGCAACCGAGGCTATGGGAGAGGTAACTGGGGGAGAGGGAATAATCCTGGGATGGGAAATAGGGGCCCTGTTAATCCAATGAGGAATAGGGGTGGTGGGATGGGGGGCAGAGGCATCATGGGTAATGGTGGGAATGGATTTGGACAAGGAATTGGTGCCACCCCACCTCTGTTGCATCCTCAGTCAATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGGCCTTTGGGTAGAATGGGTGGCTATGGGGGCTTTCCAGGTGCTCCAACTCCTCCATTCTCTGGCATTTTGCCTTCATTTCCTGCAGTTGGAGGTGTTGGTTTGCCTGGAGTAGCACCTCATGTTAATCCAGCCTTTTTTGGAAGAGGGATGCCCATGAATGGTATGGGGATGATGCCCACTTCAACAGTTGATGGGCCTAATATGGGAATGTGGTCGGATCCAAGTATGGGTGGATGGGGCGGTGAAGAGCATGGTGGTGGTAGGGCTGGAGAGTCGAGTTATGGTGAGGAAGCTGCATCAGAACATCAGTATGGTGAAGTGAGTCATGATAGAGGAGGTTGGCCAAATGCCATGAGGGAAAAAGATAGAGGATCAGAAAGGGACTGGTCTGGCTCTTCTGAACGAAGGTACAAGGATGAAAGAGATCAAGGATATGAGAGAGATGCACCTAGAGAAAAAGACATGGGGCAGGACCATGAATGGTCTGAAAGAAGACATCGTGAGGATAGAGAAGTAGGTCGTGAACGTGATAAGGAGCGCGACCGTGATCGGGAACGGTCTCGTGACCGTGAAAGAGACCGTGAACGTGATAGGTACAAGGAAGAAAGGGACAGATATGCTGACCATCATAGGTACAGAGATCGTGAAGCAGACCATGAGGATGAGTGGGAGCGGGGACGGTCATCAAGGACACACAGCAAATCAAGATTATCACAAGAGGACGATCATCATTCTAGATCTAGGGATGCTGATTATGGAAAGAGGAGACGTCTTACCTCTGAGTAA 2130 0.5014 MDEGEGGYGESGDPMDQFHRNEAISAVADEGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNEDSGFRNEEVEEKKTQSAAVPPESAGVSIPGVGVGSGGSTSGEAGDSGVMDAASRVPGRADGIQNQGFRGNEMGLKGSGGSGAPMGGGGGMRVELGQQPSKLNEMEEQSANNSAGVQGMGQQPHGGVVGNVGNENLMRQGGGGGNLNRAGGNGVGNNVSAVNVVNTGGGTAIPGGGGTGSGGGGTILFVGDLHWWTTDAELEAELCRYGPVKEVKFFDEKASGKSKGYCQVEFYDPSAASACKEQMNGYMFNGRPCVVAFASPFTVKRMGEAQVSRNQQMTQSAASQTRRGPADSGAKTGGSNITTGGNYQGGDGNRGYGRGNWGRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMNQGFDPAFGGPLGRMGGYGGFPGAPTPPFSGILPSFPAVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSTVDGPNMGMWSDPSMGGWGGEEHGGGRAGESSYGEEAASEHQYGEVSHDRGGWPNAMREKDRGSERDWSGSSERRYKDERDQGYERDAPREKDMGQDHEWSERRHREDREVGRERDKERDRDRERSRDRERDRERDRYKEERDRYADHHRYRDREADHEDEWERGRSSRTHSKSRLSQEDDHHSRSRDADYGKRRRLTSE 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1334 709 MobiDBLite consensus disorder prediction 332 372 - -
Lele01g1334 709 MobiDBLite consensus disorder prediction 55 152 - -
Lele01g1334 709 MobiDBLite consensus disorder prediction 1 23 - -
Lele01g1334 709 CDD RRM_CFIm68_CFIm59 247 320 - -
Lele01g1334 709 MobiDBLite consensus disorder prediction 550 709 - -
Lele01g1334 709 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 245 323 IPR000504 GO:0003723
Lele01g1334 709 Gene3D - 239 364 IPR012677 -
Lele01g1334 709 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 20 647 IPR034772 -
Lele01g1334 709 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 247 316 IPR000504 GO:0003723
Lele01g1334 709 SUPERFAMILY RNA-binding domain, RBD 243 337 IPR035979 GO:0003676
Lele01g1334 709 MobiDBLite consensus disorder prediction 513 709 - -
Lele01g1334 709 MobiDBLite consensus disorder prediction 61 76 - -
Lele01g1334 709 MobiDBLite consensus disorder prediction 332 407 - -
Lele01g1334 709 SMART rrm1_1 246 319 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1334 Lele-ChrLele01 8169530 8171659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1334 225 321 Eukaryotic Initiation Factors Gene Family AT4G34110 30.303 3.18e-07 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1334 01 8169530 8171659 Lele01g1334 01 8169530 8171659 ECH
Lele01g1334 01 8169530 8171659 Lele03g1343 03 8111751 8113898 hybridization
Lele01g1334 01 8169530 8171659 Lele04g1595 04 20871645 20873807 hybridization