Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1288 ATGAGCGATTCGGCTTACAGAGTCGAAACCACTTCGCGTCTCGCCCAATGGAGAATCGAAAACCCTGCTTCCTGCACTTACCGTAAATCTGATCCCTTCAAGATCGGCAAGTGGAACTGAAGCTGGAAAAGCTATTATGCATTATCCCAATTCTTATATATTCAGAATTTCTCAATAATTTCCCTTTTGATAGTAAAAGACAGATTGATCAAGAACAGCGACGACTTTGTTTGGGCACTTGAGGTTGCAGTAACTGGGAAATTCATTATTGACGTTGAGTTCCTTGATTTGAAGACTGCATCCCCAAACGGTGGAGAACCTTGCTCCATCTGGTCGGGAGGACTTACACCGAAGGCGTCTAATGCGACTGCTCTTGAAGCTCTTGGTCGGATGCTAACTGAAGGAATCCACACAGACATAGTGATCAATGCATCTGATGGAAGCATTGGAGCTCATCGCGCTGTTCTTGCGGCTCGATCTCCTGTCTTTAGCAGCATGTTCTCGCATGACCTTAAGGAGAAGGAGCTATCAGCCATAAACATTGAAGACATGTCCATTGATGCATGCCAGGCATTCCTCAATTATCTTTATGGTAGCATAGGAACTGAAGAATTTCTCACACACAGGCTTGTCCTTCTTCATGCTGCTGACAAGTATGACATATCTGACCTGAAAACGGCATGCCATGAAAGCCTTGTAGAAGATATTGATACCAAAAATGTTCTTGAGAGGCTTCAAAATGCAAACCTGTACCAATTACCAAAACTGAAGAGTAGCTGTTTACGATATCTTTTCTCAATGCCTGGAGAGGGTTCTGAAGATCTTCCTATTTCAAAGAAGGAGAGGAAGAAAAAGGTTTATAACAAACAAACCCATCAAACGGGATGCTTGGATTTTCATTTTTTATTTCTTGGAAGGATTTGTTTCCAGGAATGCTATTCTTTGCTTCAGATTGGGATTTGTTATGATTTCAATGTACATATTTATGTAATGCTATTGACATATATAGACCAAATCATTCTTGATTGGAAGGAAAAAGCAATGGTTTCAAGTCAATTTAGTACTCTCTGA 1071 0.4099 MSDSAYRVETTSRLAQWRIENPASCTYRKSDPFKIGKWNXSWKSYYALSQFLYIQNFSIISLLIVKDRLIKNSDDFVWALEVAVTGKFIIDVEFLDLKTASPNGGEPCSIWSGGLTPKASNATALEALGRMLTEGIHTDIVINASDGSIGAHRAVLAARSPVFSSMFSHDLKEKELSAINIEDMSIDACQAFLNYLYGSIGTEEFLTHRLVLLHAADKYDISDLKTACHESLVEDIDTKNVLERLQNANLYQLPKLKSSCLRYLFSMPGEGSEDLPISKKERKKKVYNKQTHQTGCLDFHFLFLGRICFQECYSLLQIGICYDFNVHIYVMLLTYIDQIILDWKEKAMVSSQFSTL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1288 356 Pfam BTB/POZ domain 131 234 IPR000210 GO:0005515
Lele01g1288 356 SMART BTB_4 138 236 IPR000210 GO:0005515
Lele01g1288 356 Gene3D Potassium Channel Kv1.1; Chain A 116 265 IPR011333 -
Lele01g1288 356 PANTHER OS08G0495500 PROTEIN-RELATED 5 266 IPR044714 -
Lele01g1288 356 SUPERFAMILY POZ domain 123 234 IPR011333 -
Lele01g1288 356 CDD BTB_POZ_ZBTB_KLHL-like 137 219 - -
Lele01g1288 356 ProSiteProfiles BTB domain profile. 138 197 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1288 Lele-ChrLele01 7844286 7846344 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele01g1288 BTB 2.6e-22 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1288 01 7844286 7846344 Lele01g1288 01 7844286 7846344 ECH
Lele01g1288 01 7844286 7846344 Lele03g1303 03 7843133 7844936 hybridization
Lele01g1288 01 7844286 7846344 Lele04g1548 04 20445900 20447700 hybridization