Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1285 ATGGAGCTCCCAGATTCGGAGTGTAACCCCGTTTGGTCTATAGAGATTGTCACTTGTGAAAAGTATCACAAATCTAGAGGGGCAAAGGGGTCTAACCGGAGCAAGAGGTTGAAGATGAAGATCACTGTAATGACTGCTGATGAACAAATTCTTACGTTGGATGTGGATCCCCATGAATCTGTGGAAAACGTCAAAGCATTGCTTGAGGTAGAGACACAAGTGCCTCTTCAGCAACAGCAACTTCTCTATAACGGAAGGGAGATGAGTAATTCTGAGAAATTGAGTGCTATGGGTGTCAAAGATGAAGATTTGGTGATGATGGTCTCTGCTGCTGCTCCTTCTGGTGCATCTGCCAATGATTTAGGCTTCAATCCTGATGGATCTGCTGTTAATCCTGCTGCTTTCCAGCAGCACATTAGACAGGATTCTAACCTGATAGGTCCGCTCTTTCAGACTGATCCAGAGTTGGCACAAGCTATTCTAGGAAGTGATCTTAACAGAATACAGGAGATTTTACGAACGCGTCATCAACAGAGAGCTGAATTACAGCGCCAAAAACAGGAGGAACTTGCCCTTCTTTATGCAGATCCTTTTGATGTTGAAGCACAAAGGAAGATTGAAGCTGCTATTCGTCAGAAAGGAATTGATGAAAACTGGGCAGCTGCACTAGAATATAATCCTGAAGCTTTTGCAAGAGTGATCATGTTGTATGTTGACATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTCGATAGTGGTGCCCAGTCTACAATTATCTCAAAAAGCTGTGCTGAGCGTTGTGGATTGTTAAGACTTATGGATCAGCGTTACAAGGGAATTGCTCATGGAGTTGGCCAATCAGAGATATTGGGTCGAATCCATGTAGCTCCAATCAAGATTGGGAATATATTCTACCCTTGCTCGTTCTTAGTGCTCGATTCTCCTAACATGGAGTTCCTTTTTGGGCTGGATATGCTCCGAAAGCACCAGTGCATTATAGATTTAAAAGAAAATGTTTTGCGAGTCGGTGGAGGAGAAGTTTCTGTGCCATTTTTGCAAGAAAAAGACCTACCATCTCGGTTTCTGGACGAAGAAAGGTACGCCAAGGAAGCATCCAGCTCAGGCGCCTCGGCAACAGGAACAACAGATAGGAGTGGTAGTGCACCAAAAGGAGGCCAGTCTTCAGGAGGAGTTTCTGGTGGCACTTCTCAGGGGAGTGAATTTGAAGCAAAAGTTGCAAAGCTGGTGGAGTTAGGGTTTGGAAGAGAAGCAGTTGTACAAGCTCTGAAATTATTCAATGGCAATGAGGATCAGGCTGCTGGGTTTCTGTTCGGGGGTTTCTAG 1347 0.4469 MELPDSECNPVWSIEIVTCEKYHKSRGAKGSNRSKRLKMKITVMTADEQILTLDVDPHESVENVKALLEVETQVPLQQQQLLYNGREMSNSEKLSAMGVKDEDLVMMVSAAAPSGASANDLGFNPDGSAVNPAAFQQHIRQDSNLIGPLFQTDPELAQAILGSDLNRIQEILRTRHQQRAELQRQKQEELALLYADPFDVEAQRKIEAAIRQKGIDENWAAALEYNPEAFARVIMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLMDQRYKGIAHGVGQSEILGRIHVAPIKIGNIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDLPSRFLDEERYAKEASSSGASATGTTDRSGSAPKGGQSSGGVSGGTSQGSEFEAKVAKLVELGFGREAVVQALKLFNGNEDQAAGFLFGGF 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1285 448 Pfam UBA/TS-N domain 410 443 IPR015940 -
Lele01g1285 448 Pfam Aspartyl protease 213 335 IPR019103 GO:0004190|GO:0006508
Lele01g1285 448 CDD Ubl_Ddi1_like 39 108 IPR033882 -
Lele01g1285 448 ProSiteProfiles Ubiquitin domain profile. 39 108 IPR000626 GO:0005515
Lele01g1285 448 FunFam DNA damage inducible 1 homolog 2 213 360 - -
Lele01g1285 448 Gene3D - 30 120 - -
Lele01g1285 448 CDD UBA_scDdi1_like 410 445 - -
Lele01g1285 448 SMART ubq_7 39 110 IPR000626 GO:0005515
Lele01g1285 448 PANTHER ASPARTYL PROTEASE DDI-RELATED 39 444 - -
Lele01g1285 448 Pfam Ubiquitin family 41 108 IPR000626 GO:0005515
Lele01g1285 448 MobiDBLite consensus disorder prediction 373 405 - -
Lele01g1285 448 CDD RP_DDI 220 343 IPR019103 GO:0004190|GO:0006508
Lele01g1285 448 MobiDBLite consensus disorder prediction 370 405 - -
Lele01g1285 448 SUPERFAMILY Ubiquitin-like 38 114 IPR029071 -
Lele01g1285 448 SUPERFAMILY UBA-like 399 447 IPR009060 GO:0005515
Lele01g1285 448 Gene3D Acid Proteases 214 360 IPR021109 -
Lele01g1285 448 Gene3D - 374 447 - -
Lele01g1285 448 Coils Coil 168 188 - -
Lele01g1285 448 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 407 447 IPR015940 -
Lele01g1285 448 SUPERFAMILY Acid proteases 221 336 IPR021109 -
Lele01g1285 448 SMART uba_6 409 446 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1285 Lele-ChrLele01 7824161 7830163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1285 39 108 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 27.143 4.15e-06 44.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1285 01 7824161 7830163 Lele01g1285 01 7824161 7830163 ECH
Lele01g1285 01 7824161 7830163 Lele04g1545 04 20425151 20430763 hybridization