LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele01g1280	ATGGGTCGTCTTCCTTGCTGCGAGAAGGACAACGTTAAAAGAGGACAGTGGACACCTGAGGAAGACAACAAGCTCTCTTCCTACATTGCTCAACATGGCACCAGGAATTGGCGCCTCATTCCTAAGAATGCTGGCCTTCAGAGGTGTGGCAAGAGCTGCAGGCTAAGGTGGACTAACTACCTTCGTCCTGATCTCAAGCATGGTCAGTTTTCAGACGCAGAAGAGCAAACCATTGTGAAGCTTCACTCCGTTTTTGGTAACCGATGGTCGCTAATAGCAGCACAGCTGCCGGGCCGCACCGACAATGATGTCAAGAATCACTGGAACACCAAGCTGAAGAAGAAACTTTCAGGCATGGGGATAGACCCGGTCACCCACAAGGCATTCTCCCAACTGATGGCCGAAATTGCTACAACATTGGCACCCCCACAGGCAGCTCACCTAGCTGAAGCAGCTCTGGGCTGCTTTAAAGACGAGGTGCTTCATCTTCTTACCAAGAAGAAGATTAACTTCCAGGCTCAACAACACCCCACTGAACAAATAGGGAATAACATTACCTCTTTCATGAACTATAATAAACCTGATGACAAGGAAGACACTTGTGAGAAGATTAAGTTTGGGTTATCAAAGGCCATGCGAGAACCTGAAATGATAACCTCAAATAAACATTGGGACTGCACTGCAGCTACAACTGCTAGTTTTGAGGGGACTAGCAGTGTCTTCCCTACAGTGACTGGGTTTCAATTTAGTCCGTCGCCGTTCACCAATGAAGGGGATAGATCACCGTGGAGCCAAAGTGTGTGTACTCCCGGAAGTACATGCACAGCCATGGATCATCAACAAGGCCAGTTACCTAAAAAGCTTCAGGAAGAAAATGGAGATGATTCTAATACTGAAAAAGAAATTAGATATGGATCCAATTTATTCAACGAGCAGTGTGTTTTGTGGGATTTACCGTCAGAAGATCTAATTAATCCCATGGTATAA	987	0.462	MGRLPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDAEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKAFSQLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTKKKINFQAQQHPTEQIGNNITSFMNYNKPDDKEDTCEKIKFGLSKAMREPEMITSNKHWDCTAATTASFEGTSSVFPTVTGFQFSPSPFTNEGDRSPWSQSVCTPGSTCTAMDHQQGQLPKKLQEENGDDSNTEKEIRYGSNLFNEQCVLWDLPSEDLINPMV	328

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele01g1280	328	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	66	116	IPR017930	-
	Lele01g1280	328	FunFam	Transcription factor RAX3	7	67	-	-
	Lele01g1280	328	PANTHER	F14D16.11-RELATED	1	326	-	-
	Lele01g1280	328	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Lele01g1280	328	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Lele01g1280	328	CDD	SANT	70	112	IPR001005	-
	Lele01g1280	328	CDD	SANT	17	61	IPR001005	-
	Lele01g1280	328	Pfam	Myb-like DNA-binding domain	68	110	IPR001005	-
	Lele01g1280	328	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Lele01g1280	328	SMART	sant	13	63	IPR001005	-
	Lele01g1280	328	SMART	sant	66	114	IPR001005	-
	Lele01g1280	328	FunFam	transcription factor MYB80	69	129	-	-
	Lele01g1280	328	MobiDBLite	consensus disorder prediction	251	282	-	-
	Lele01g1280	328	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Lele01g1280	328	Gene3D	-	69	131	-	-
	Lele01g1280	328	Gene3D	-	14	66	-	-
	Lele01g1280	328	MobiDBLite	consensus disorder prediction	284	300	-	-
	Lele01g1280	328	MobiDBLite	consensus disorder prediction	251	300	-	-
	Lele01g1280	328	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	65	IPR017930	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele01g1280	Lele-ChrLele01	7785306	7787032	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele01g1280	1	328	MYB Transcription Factor Family	AT5G56110	55.522	1.80e-115	335

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele01g1280		Myb_DNA-binding	1.7e-15	CL0123