Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1261 ATGATTATGAAACTGGAGGGGGCTATGTCTTATTACAGAAGATCAAGGTATTCTCGATCACCTTCTCCCTACAATCGATATGGGAGGTCTGTCTCCAGGTCTCTGTCTAGGTCAATATCTAGAAGCTTTTCAAGGAGCCCATCAAGAGATGCAGAGAATCCTGGTAACAACTTGTATGTTACAGGCTTGTCTCCTCGGATTACCAAGAGAGAACTAGAGAAGCATTTTGCAAGTGAGGGAAAAGTGATTGATGTTCATTTAGTTGTTGATCCTTGTACAAGAGAATCACGAGGGTTTGGATTTGTGACTATGGAAACTGTTAAGGAGGCTGACCGATGCATAAAGTATCTGAATCGCTCTGTGCTAGAAGGGCGTGTCATAATGGTAGAGAAGTTTCTGTGGCAGCAGGCTAGAAGACGTCGAGGTCGAACTCCAACCCCTGGGAGGTATCTTGGGTTGAGGACTGTTCAGGCTCGTCGGCGCTCTGTGAGCTCCTCCCCTCGCCGCTCTCCTAGTTATTCTCCTTACAGAAGAAGTTACAGTGGGTCGCCATATTCTTCAGATCACAGCAGGAGTCATTCCTACTCTCCTTACCACAGCCCGCGGAGGTCGTATTCTCCCTATTACAGCAGAAGGAGGCCCTACTCTCCTCATGGCTGGCACAGATACTATGACCGACACAGATCCTATTCTCCTTACAGCAGGTCACCTGTTAGCAGGCGAGATAGATCATACTCTCCTTATGACTCAAGGTATGATCGCTACTACAGAAGGCACCGTTATAGGTCCATTTCTCGAAGTGTCTCACCAAGGCCAAGGAGAAGCTCAAGGAGGTATTCTCGCAGCGTCTCTCCTGTGAAGAGGAGGGGCTCAAGAAGGGGCTATCCTCGGAGTCCGTCCCCTAGACCAAGGAGGAGTTCATGGAGGAGGAGCTATTCGCGAAGCCTTTCCCCTAGACCAAGGAGGAGTTCAAGAAAGAGCTATTCTCGCAGCATCTCTCCAAGACCAAGAGGTAGTAGTAGGAGAGGTGGTTCTTCTAAACGTGGGCATACACCAGTTAGTGATAGAAGCTACTCAACAAGTCCAAGTTTAAGTTCAAGATCAGTATCAAGGTCTCTTACTCCTAGATCAGCGTCTCCTTGA 1143 0.4821 MIMKLEGAMSYYRRSRYSRSPSPYNRYGRSVSRSLSRSISRSFSRSPSRDAENPGNNLYVTGLSPRITKRELEKHFASEGKVIDVHLVVDPCTRESRGFGFVTMETVKEADRCIKYLNRSVLEGRVIMVEKFLWQQARRRRGRTPTPGRYLGLRTVQARRRSVSSSPRRSPSYSPYRRSYSGSPYSSDHSRSHSYSPYHSPRRSYSPYYSRRRPYSPHGWHRYYDRHRSYSPYSRSPVSRRDRSYSPYDSRYDRYYRRHRYRSISRSVSPRPRRSSRRYSRSVSPVKRRGSRRGYPRSPSPRPRRSSWRRSYSRSLSPRPRRSSRKSYSRSISPRPRGSSRRGGSSKRGHTPVSDRSYSTSPSLSSRSVSRSLTPRSASP 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1261 380 SUPERFAMILY RNA-binding domain, RBD 44 151 IPR035979 GO:0003676
Lele01g1261 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 127 IPR000504 GO:0003723
Lele01g1261 380 CDD RRM_RBMX_like 55 131 - -
Lele01g1261 380 MobiDBLite consensus disorder prediction 257 328 - -
Lele01g1261 380 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 52 255 - -
Lele01g1261 380 MobiDBLite consensus disorder prediction 231 380 - -
Lele01g1261 380 MobiDBLite consensus disorder prediction 38 57 - -
Lele01g1261 380 MobiDBLite consensus disorder prediction 158 203 - -
Lele01g1261 380 Gene3D - 29 186 IPR012677 -
Lele01g1261 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 130 IPR000504 GO:0003723
Lele01g1261 380 MobiDBLite consensus disorder prediction 138 211 - -
Lele01g1261 380 MobiDBLite consensus disorder prediction 329 380 - -
Lele01g1261 380 MobiDBLite consensus disorder prediction 242 256 - -
Lele01g1261 380 SMART rrm1_1 57 130 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1261 Lele-ChrLele01 7648404 7650905 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1261 57 147 Eukaryotic Initiation Factors Gene Family AT1G22760 30.769 9.00e-09 55.5