Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele01g1259 | ATGCTAACTCAAGGATTTTGTTCATCTGCTTCGAAGATGTCCTACTCCAGAAGATCAAGGCATTCTCAATCACCTTTGTACAAGCGATATGGTAGGTCTGTTTCCAGGTCTCTGTCAAGATCAAGATCAAGATCAAGATCAAGAAGTTTTTCAAGGAGCCCATCAAGAGAAGCAGAGAATCCTGGTAACAACTTGTATGTGACAGGGTTGTCTGCTCGGATTACCAAGAGAGAATTGGAGAAGCATTTTGCAAGCGAGGGAAAAGTGATTGACGTTCGCCTGGTTGTTGATCCATGGACAAGAGAATCACGTGGGTTTGGATTTGTAACGATGGAAACTGTTGAGGATGCTGACCGATGTGTAAAGTATCTGGATCGCTCTGTACTAGAAGGGCGTGTCATCACGGTAGAAAAGGCTAGAAGAAGTCGGGGTCGAACCCCAACGCCTGGGAGGTATCTTGGGCTAAGGACTGTTCGAGTGCGTCATCGCTCTTCAAGCTATTCTCCTCGCCGCTCCCCTAGTTATTCTCCCTACAGAAGAAGCTGTAGTCGTTCTCCATATTCTTATGATCACAGTAGGAGTCGCTCTTATGCTCATTATCGCAGTCGACGGAGGTCTTACTCCCCATATTATAGTCGGGATAGATCTTATAGCCCTTATGATCGACGCAGACCCTATTCTCCGTATTATCGACACAGGCCATACTCTCAATCCCGCTCACCAAACAGCAGGTCAACTGTCAGGAGGAGGCGAGATAGATCATACGCTCCTTATGACTCACCTGATGATCGCTATCATAGAAGGCACCGTTACAGGTCCATTTCCCCAAGTGCCTCATCAAGGCCAAGGAGAAGTTCAAGGAGGTATTCCCGTAGTGTCTCTCCGGTGAAGAGGAGGAGCTCAAGAAGGAGCTATTCTCGGAGTCTGTCCCCTAGACCGAGGAGTTCACGAGCAAGGAGCTACTCACCAAGTCCTTCTTGTAGGCCAAGGAGGAGTTCACGAAGGAGCTATTCTCTCAGCATTTCGCCAAGGCCAAGAGGCAGTAGTAGGAGAGGTGGTTCTTCTAAACGTGGGCATACACCAGTTAGTGATAGAAGCTACTCAAGAAGTCCCAGTGTGAGTGCTAGTTCAAGATCAGTATCAAGGTCTCTTACTCCCAGATCAGCTTCCTCCTGA | 1176 | 0.4796 | MLTQGFCSSASKMSYSRRSRHSQSPLYKRYGRSVSRSLSRSRSRSRSRSFSRSPSREAENPGNNLYVTGLSARITKRELEKHFASEGKVIDVRLVVDPWTRESRGFGFVTMETVEDADRCVKYLDRSVLEGRVITVEKARRSRGRTPTPGRYLGLRTVRVRHRSSSYSPRRSPSYSPYRRSCSRSPYSYDHSRSRSYAHYRSRRRSYSPYYSRDRSYSPYDRRRPYSPYYRHRPYSQSRSPNSRSTVRRRRDRSYAPYDSPDDRYHRRHRYRSISPSASSRPRRSSRRYSRSVSPVKRRSSRRSYSRSLSPRPRSSRARSYSPSPSCRPRRSSRRSYSLSISPRPRGSSRRGGSSKRGHTPVSDRSYSRSPSVSASSRSVSRSLTPRSASS | 391 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele01g1259 | 391 | MobiDBLite | consensus disorder prediction | 167 | 192 | - | - | |
Lele01g1259 | 391 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 65 | 134 | IPR000504 | GO:0003723 | |
Lele01g1259 | 391 | MobiDBLite | consensus disorder prediction | 245 | 269 | - | - | |
Lele01g1259 | 391 | MobiDBLite | consensus disorder prediction | 306 | 391 | - | - | |
Lele01g1259 | 391 | SUPERFAMILY | RNA-binding domain, RBD | 51 | 166 | IPR035979 | GO:0003676 | |
Lele01g1259 | 391 | SMART | rrm1_1 | 64 | 137 | IPR000504 | GO:0003723 | |
Lele01g1259 | 391 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
Lele01g1259 | 391 | Gene3D | - | 8 | 147 | IPR012677 | - | |
Lele01g1259 | 391 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 63 | 141 | IPR000504 | GO:0003723 | |
Lele01g1259 | 391 | MobiDBLite | consensus disorder prediction | 284 | 305 | - | - | |
Lele01g1259 | 391 | MobiDBLite | consensus disorder prediction | 158 | 391 | - | - | |
Lele01g1259 | 391 | CDD | RRM_RBMX_like | 62 | 141 | - | - | |
Lele01g1259 | 391 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Lele01g1259 | 391 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 57 | 309 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele01g1259 | Lele-ChrLele01 | 7637206 | 7640365 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele01g1259 | 64 | 178 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 31.897 | 3.61e-08 | 53.5 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele01g1259 | 01 | 7637206 | 7640365 | Lele01g1259 | 01 | 7637206 | 7640365 | ECH | |
Lele01g1259 | 01 | 7637206 | 7640365 | Lele03g1272 | 03 | 7617851 | 7620924 | hybridization | |
Lele01g1259 | 01 | 7637206 | 7640365 | Lele04g1515 | 04 | 20213264 | 20216163 | hybridization |