Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1259 ATGCTAACTCAAGGATTTTGTTCATCTGCTTCGAAGATGTCCTACTCCAGAAGATCAAGGCATTCTCAATCACCTTTGTACAAGCGATATGGTAGGTCTGTTTCCAGGTCTCTGTCAAGATCAAGATCAAGATCAAGATCAAGAAGTTTTTCAAGGAGCCCATCAAGAGAAGCAGAGAATCCTGGTAACAACTTGTATGTGACAGGGTTGTCTGCTCGGATTACCAAGAGAGAATTGGAGAAGCATTTTGCAAGCGAGGGAAAAGTGATTGACGTTCGCCTGGTTGTTGATCCATGGACAAGAGAATCACGTGGGTTTGGATTTGTAACGATGGAAACTGTTGAGGATGCTGACCGATGTGTAAAGTATCTGGATCGCTCTGTACTAGAAGGGCGTGTCATCACGGTAGAAAAGGCTAGAAGAAGTCGGGGTCGAACCCCAACGCCTGGGAGGTATCTTGGGCTAAGGACTGTTCGAGTGCGTCATCGCTCTTCAAGCTATTCTCCTCGCCGCTCCCCTAGTTATTCTCCCTACAGAAGAAGCTGTAGTCGTTCTCCATATTCTTATGATCACAGTAGGAGTCGCTCTTATGCTCATTATCGCAGTCGACGGAGGTCTTACTCCCCATATTATAGTCGGGATAGATCTTATAGCCCTTATGATCGACGCAGACCCTATTCTCCGTATTATCGACACAGGCCATACTCTCAATCCCGCTCACCAAACAGCAGGTCAACTGTCAGGAGGAGGCGAGATAGATCATACGCTCCTTATGACTCACCTGATGATCGCTATCATAGAAGGCACCGTTACAGGTCCATTTCCCCAAGTGCCTCATCAAGGCCAAGGAGAAGTTCAAGGAGGTATTCCCGTAGTGTCTCTCCGGTGAAGAGGAGGAGCTCAAGAAGGAGCTATTCTCGGAGTCTGTCCCCTAGACCGAGGAGTTCACGAGCAAGGAGCTACTCACCAAGTCCTTCTTGTAGGCCAAGGAGGAGTTCACGAAGGAGCTATTCTCTCAGCATTTCGCCAAGGCCAAGAGGCAGTAGTAGGAGAGGTGGTTCTTCTAAACGTGGGCATACACCAGTTAGTGATAGAAGCTACTCAAGAAGTCCCAGTGTGAGTGCTAGTTCAAGATCAGTATCAAGGTCTCTTACTCCCAGATCAGCTTCCTCCTGA 1176 0.4796 MLTQGFCSSASKMSYSRRSRHSQSPLYKRYGRSVSRSLSRSRSRSRSRSFSRSPSREAENPGNNLYVTGLSARITKRELEKHFASEGKVIDVRLVVDPWTRESRGFGFVTMETVEDADRCVKYLDRSVLEGRVITVEKARRSRGRTPTPGRYLGLRTVRVRHRSSSYSPRRSPSYSPYRRSCSRSPYSYDHSRSRSYAHYRSRRRSYSPYYSRDRSYSPYDRRRPYSPYYRHRPYSQSRSPNSRSTVRRRRDRSYAPYDSPDDRYHRRHRYRSISPSASSRPRRSSRRYSRSVSPVKRRSSRRSYSRSLSPRPRSSRARSYSPSPSCRPRRSSRRSYSLSISPRPRGSSRRGGSSKRGHTPVSDRSYSRSPSVSASSRSVSRSLTPRSASS 391
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1259 391 MobiDBLite consensus disorder prediction 167 192 - -
Lele01g1259 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Lele01g1259 391 MobiDBLite consensus disorder prediction 245 269 - -
Lele01g1259 391 MobiDBLite consensus disorder prediction 306 391 - -
Lele01g1259 391 SUPERFAMILY RNA-binding domain, RBD 51 166 IPR035979 GO:0003676
Lele01g1259 391 SMART rrm1_1 64 137 IPR000504 GO:0003723
Lele01g1259 391 MobiDBLite consensus disorder prediction 1 64 - -
Lele01g1259 391 Gene3D - 8 147 IPR012677 -
Lele01g1259 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Lele01g1259 391 MobiDBLite consensus disorder prediction 284 305 - -
Lele01g1259 391 MobiDBLite consensus disorder prediction 158 391 - -
Lele01g1259 391 CDD RRM_RBMX_like 62 141 - -
Lele01g1259 391 MobiDBLite consensus disorder prediction 1 38 - -
Lele01g1259 391 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 57 309 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele01g1259 Lele-ChrLele01 7637206 7640365 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1259 64 178 Eukaryotic Initiation Factors Gene Family AT2G36660 31.897 3.61e-08 53.5
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1259 01 7637206 7640365 Lele01g1259 01 7637206 7640365 ECH
Lele01g1259 01 7637206 7640365 Lele03g1272 03 7617851 7620924 hybridization
Lele01g1259 01 7637206 7640365 Lele04g1515 04 20213264 20216163 hybridization