Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1250 ATGAAGTGGGAAACGGGAATGTTCTCACCTGGACAATACATCATCAATCCCAACACCAGCTGGATTGTTGAAGATAATCGGAATTCCAAATGGACTTGTGCTGAGAACAAACTCTTCGAGAATGCTCTCGCTGTTTACGATAAGGATACACCAGATCGGTGGCAGAAAGTGGCCGCAGAGATCCCAGGGAAGACGGTCGTTGACGTGATGAAGCAGTACAAACAGCTTGAAGATGATGTTTGTGACATAGAAGCTGGCCTGGTCTCAGTTCCTGACTATTACGCCATCACTACTCCTTCCTCCTCACCTTTCACCTTGGATTCTTGGGCAAGCTTTTCTTCTGGTTATGAGCCCTCGCTCGGATTCCATGGAAAGAGACCCTCCTCTGGAAGATCCTCTGAGAATGAAAGGAAGAAAGGAGTCCCTTGGACCGAAGAAGAACACAAACTGTTTCTTCTGGGGCTGAAGAAGCATGGGAAAGGAGATTGGAGGAACATATCAAGGAACTTTGTGATGACTCGAACACCGACTCAAGTAGCTAGTCATGCTCAGAAATACTTCATAAGGCAACTCTCAGGAGGCAAAGACAAAAGAAGAGCAAGCATCCATGACATAACCACTGTGAACCTCGCAGAAACTTCAATCAAAGCTTCTTCTCATTCACGAGACACCACCAAGAAGTCCTCTTCTTCTTCTTCTTCTTCACCGCCACGACAGAACCGCATGAACATGATGATGCTCTCACCCTCATCACAACAGCAGCAGCAGAATTCTGCAGCAGTTCCCAGCAGAATACAGTTTCAGTGGACCCAACAGCCAATGGCTACTTCTCTGAGGGATCCTGCACTTGATGAACTGTTCATGTCTGATTATTCTTATGGGATTGGTGATGACTTGTCATCATCCTTTGGGTTTACAATGCAGGGCCAGAATCTGCACACAAGTTCTCGTTTTCATCACGAATCTTCTTCCTACTTAGGACCTCACAGTCAAAGCATGGTTTTCCAGATGCCATGA 1017 0.4631 MKWETGMFSPGQYIINPNTSWIVEDNRNSKWTCAENKLFENALAVYDKDTPDRWQKVAAEIPGKTVVDVMKQYKQLEDDVCDIEAGLVSVPDYYAITTPSSSPFTLDSWASFSSGYEPSLGFHGKRPSSGRSSENERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVMTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLAETSIKASSHSRDTTKKSSSSSSSSPPRQNRMNMMMLSPSSQQQQQNSAAVPSRIQFQWTQQPMATSLRDPALDELFMSDYSYGIGDDLSSSFGFTMQGQNLHTSSRFHHESSSYLGPHSQSMVFQMP 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1250 338 ProSiteProfiles Myb-like domain profile. 135 187 IPR001005 -
Lele01g1250 338 SMART sant 139 189 IPR001005 -
Lele01g1250 338 SMART sant 27 79 IPR001005 -
Lele01g1250 338 FunFam Transcription factor SRM1 23 90 - -
Lele01g1250 338 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 25 258 IPR043363 -
Lele01g1250 338 Gene3D - 141 191 - -
Lele01g1250 338 SUPERFAMILY Homeodomain-like 29 84 IPR009057 -
Lele01g1250 338 FunFam transcription factor MYB1R1 141 192 - -
Lele01g1250 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 191 IPR017930 -
Lele01g1250 338 ProSiteProfiles SANT domain profile. 143 191 IPR017884 -
Lele01g1250 338 CDD SANT 142 187 IPR001005 -
Lele01g1250 338 Pfam Myb-like DNA-binding domain 142 187 IPR001005 -
Lele01g1250 338 MobiDBLite consensus disorder prediction 121 141 - -
Lele01g1250 338 SUPERFAMILY Homeodomain-like 137 190 IPR009057 -
Lele01g1250 338 MobiDBLite consensus disorder prediction 213 243 - -
Lele01g1250 338 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 138 190 IPR006447 GO:0003677
Lele01g1250 338 CDD SANT 30 76 IPR001005 -
Lele01g1250 338 Gene3D - 23 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1250 Lele-ChrLele01 7573514 7574764 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele01g1250 Myb_DNA-binding 9.9e-13 CL0123