Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1233 ATGGGGAAATCAGCGTTTCATGATTCTCTCAAAGCTCTGGAAGCTGATATTCTGTACGCCAATGCTCTGTTGTTAGGGTATCCAAGGGATAAAGATGGAGCATGCTTTCAAATGAGACTGTCATACGGTCCAGGTTATACCTTATTTCTTTTTCTTGTTCAATGGGCGGATTACCACCTGGCTGGTGCTCTGGGTTTGCTGAGGGTTCTGATTTATATGACGTATGGAGATGGGAAGACCACCATGTCAATATATGAAAGGAAAGCAAGCATTAAAGAGTTTAACTCGGTGATATTTCCTGCTTTATTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAAGAAGCAAAATGAAGTCTATGCTATCAGATACAAGAAGAAAGAAAAGCAATCAAAATTTGACATGGAAAGAGAAGAGGAATGTGGAATTTGCTTGGAGGTGAAGGCAAAAGTTGTGCTGCCTAATTGCTGCCATTGCATGTGTTTGAAGTGCTTCAGGGATTGGTGTGAGAGATCCGAGTCGTGCCCCTTTTGCAGGGGAAATCTTAAAAGGGTCAACTCAGGCGACCTTTGGAATTACATAGATGATGGTGATGTTGTGGATATCAGAACGATTTTCAAAGAAAACCTCAAGAGGCTGCATTTGTACATAGAGAAGTTGCCTATCGTCGATCCAGACCCCATGCATGTCTCTTATGAACCTTGTAGGAGTTAA 717 0.4198 MGKSAFHDSLKALEADILYANALLLGYPRDKDGACFQMRLSYGPGYTLFLFLVQWADYHLAGALGLLRVLIYMTYGDGKTTMSIYERKASIKEFNSVIFPALLQLEKGITDLEEKKQNEVYAIRYKKKEKQSKFDMEREEECGICLEVKAKVVLPNCCHCMCLKCFRDWCERSESCPFCRGNLKRVNSGDLWNYIDDGDVVDIRTIFKENLKRLHLYIEKLPIVDPDPMHVSYEPCRS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1233 238 PANTHER RING FINGER PROTEIN 41, 151 4 227 - -
Lele01g1233 238 ProSiteProfiles Zinc finger RING-type profile. 142 180 IPR001841 -
Lele01g1233 238 FunFam RING/U-box superfamily protein 123 189 - -
Lele01g1233 238 Pfam Ring finger domain 141 180 IPR001841 -
Lele01g1233 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 190 IPR013083 -
Lele01g1233 238 SUPERFAMILY RING/U-box 130 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1233 Lele-ChrLele01 7463545 7465504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1233 82 184 C3H Transcription Factor Family AT1G04360 24.779 1.31e-06 46.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1233 01 7463545 7465504 Lele01g1233 01 7463545 7465504 ECH
Lele01g1233 01 7463545 7465504 Lele03g1245 03 7430852 7432997 hybridization
Lele01g1233 01 7463545 7465504 Lele04g1487 04 20037622 20039770 hybridization