Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1230 ATGGAAGATGGCATTGAGAAAAAAGGAGAGGGAAGTGGGAAGAAGAATGTGATGATGGAGAGGAGGAAGTCGGATCTACTGGTGACGATACAGAGAGACAATAGCAATGGCGGAATGAGAGGTCAAGTGTTGAGGAGAATTATGGGAAACTTGCAAGAGGTCATCTTCGGAACCAAGCTTGCCGTGCTTTTTCCCGCCGTCCCTCTCGCCGTTGCCGCCGATTCCTATGACTTTGGACGAGCGTGGATATTTGCTTTGAGCTTACTTGGACTGGCCCCTCTAGCTGAACGTGTCAGCTTTCTCACAGAGCAGATCGCATATTACACTGGCCCAACAGTGGGAGGGCTTCTGAATGCAACATGTGGGAATGCAACGGAGATGATAATAGCACTATTGGCACTTCACAAGAACAAAATCAATGTTGTCAAGTTCTCTCTTTTGGGTTCCATTCTCTCTAACCTCCTCTTAGTTCTTGGCTCTTCACTCCTCTGTGGAGGCCTTGCCAACCTCAAGAGAGAACAGAGATATGACAGAAAACAGGCAGATGTAAACTCACTGCTTTTGCTTTTGGGGTTGCTTTGCCATTTGCTTCCATTGATCTTCAAGTATGCCCTAGCAGGGGACCATTACCCTGTAGCCACTTCCACTCTTCAACTGTCAAGAGCAAGTAGTATTGTTATGCTTCTTGCTTATGCTGCATATATCTTCTTCCAACTAAAAACTCACAGGCAGTTATTTGATTCACAAGAGGAAGAGGGAGAAGAAGAGAAGGCTGTAATAGGATTTTGGGTAGCATTTACTTGGTTGGTGGGCATGACACTTTTCATATCTTTGCTTTCTGAATATGTTGTGGGAACTATTGAGGCTGCTTCAGATTCTTGGGGTATTTCTGTAAGCTTCATTAGCATAATTTTGCTCCCTATTGTGGGGAATGCCGCAGAACATGCTGGTTCGATCATATTTGCTTTTAAGAACAAGCTGGATATATCCCTAGGTGTTGCTATGGGATCTGCAACTCAAATTTCTATGTTTGTGGTTCCATTAAGTGTGATTGTTGCATGGATAATGGGTGTAAAAATGGACCTAGATTTTAACCTGCTAGAAACAGGGTGTCTGGCTTTGACAATATTAGTCACAGCTTTCACTTTGCAGGATGGAACTTCACACTATATGAAAGGAGTGGTGCTTTCCCTGTGTTATGTTGTCATTGCTGCTTGCTTCTTTGTTCATAAAGCTCCATTTTCTGATCAAGTTCCAGGGCAGAAAGTTAGGTTTCAACCATCTGTGGATGCCATGGCCACTTGA 1305 0.4398 MEDGIEKKGEGSGKKNVMMERRKSDLLVTIQRDNSNGGMRGQVLRRIMGNLQEVIFGTKLAVLFPAVPLAVAADSYDFGRAWIFALSLLGLAPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIIALLALHKNKINVVKFSLLGSILSNLLLVLGSSLLCGGLANLKREQRYDRKQADVNSLLLLLGLLCHLLPLIFKYALAGDHYPVATSTLQLSRASSIVMLLAYAAYIFFQLKTHRQLFDSQEEEGEEEKAVIGFWVAFTWLVGMTLFISLLSEYVVGTIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVAMGSATQISMFVVPLSVIVAWIMGVKMDLDFNLLETGCLALTILVTAFTLQDGTSHYMKGVVLSLCYVVIAACFFVHKAPFSDQVPGQKVRFQPSVDAMAT 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1230 434 TIGRFAM cax: calcium/proton exchanger 65 408 IPR004798 GO:0006816|GO:0015369
Lele01g1230 434 Pfam Sodium/calcium exchanger protein 81 239 IPR004837 GO:0016020|GO:0055085
Lele01g1230 434 Pfam Sodium/calcium exchanger protein 265 406 IPR004837 GO:0016020|GO:0055085
Lele01g1230 434 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 36 413 IPR004713 GO:0006812|GO:0008324|GO:0016020
Lele01g1230 434 Gene3D - 111 409 IPR044880 -
Lele01g1230 434 FunFam Vacuolar cation/proton exchanger 111 254 - -
Lele01g1230 434 TIGRFAM caca2: calcium/proton exchanger 47 408 - -
Lele01g1230 434 FunFam Vacuolar cation/proton exchanger 255 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1230 Lele-ChrLele01 7438365 7441075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1230 21 418 Antiporters AT2G38170 67.980 0.0 521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1692 25 24604647 24611650 Lele01g1230 01 7438365 7441075 CCT
Lele26g1694 26 20471041 20475198 Lele01g1230 01 7438365 7441075 CCT
Lele27g0396 27 3572925 3582878 Lele01g1230 01 7438365 7441075 CCT
Lele28g1698 28 19911706 19917379 Lele01g1230 01 7438365 7441075 CCT
Lele01g1230 01 7438365 7441075 Lele01g1230 01 7438365 7441075 ECH
Lele01g1230 01 7438365 7441075 Lele03g1242 03 7400510 7404376 hybridization
Lele01g1230 01 7438365 7441075 Lele04g1484 04 20012874 20015629 hybridization