Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1219 ATGCCGACGCCGGTCAGCGTAGCAAGGCAATGCTTGACGGAGGAGGCCGCTCGCGCTTTGGACGACGCTGTGGCGGTTGCTCGCCGCCGCAACCATTCGCAGACAACTTCGCTTCATGCTATATCTGCCTTGCTCGCCCTGCCTTCTTCCCCTCTCAGGGATGCTTGCACACGCGCGCGGAGCTGCTCATATTCCCCGCGTTTACAGTTCAAAGCTTTAGAGCTCTCTGTGGGTGTGTCTCTTGACAGATTGCCCACCACTAAGTCTCTCGAGGATGACCCTCCTATATCCAATTCACTCATGGCCGCTATCAAGCGATCCCAAGCGAACCAGAGGAGGCATCCAGAGAGTTTTCATTTGATACAGATGCATATGCATCAGCAGCAGCAAGCGGCCTCGTTTTTGAAGGTGGAGCTCAAGCACTTCATTTTGTCCATTCTCGATGATCCGATTGTGAGCAGAGTTTTTGGGGAAGCTGGTTTTCGAAGCTGTGACATCAAGATTGCATTGCTTCAACCTCCTATAGCGCAAGCTTCTACTCGATTCTTCCGGGGCCGTTACCCACCTTTATTTTTCTGCAATCTAACAGGTTCGGAAATGGATCGTCCAGGTTTCAACTTCCCTTTCATGACCAATCCTGGACACAAAGATGGAGACGAGAATTGTAGAAGAATTGCGGAGGTTCTTGTGAGGAAGACAAAGAAAAATCCCTTACTGATGGGTGTTTACGCGAAGGGTACTCTTATGAGATTCACTGACACTGTACAGAGAGGTCGGGTGGGTTTGTTGCCGGCTGATATTGCTGGGCTTAATATGATTTGCATTGAGAAGGAGATTGCTGAGTTTTTTGTTGAAGGTGGCAGTGAAGAGAAGATGATTTTGAAATTTAAGGAATTGAGTCGTGCAGTCGAGCAGTGCTCAGGTCCGGGAATCATTGTGAATTTCGGAGAGCTTGAGGCATTCGTGGGGGATGGTGTGCCTGGTGCTGCTGTGAATTTTGTCGTCTCACAACTATCAAGCTTATTGGAAATCCATGGTGACAAATTATGGCTGGTAGGCGTGGTAGGAACCTCTGTTATATATTCCAAGTTTTTAACTATGTTCCCAACTGTGGAAAAGGATTGGGATATGCATCTGCTGACCATGACATCTGCCTCCCCTTCAATTGAGGGGCTCTACTCTAAATCCAGTTTGATGGGGTCCTTTGTGCCATTTGGTGGTTTCTTTTCTACACCACCTGAATTCAAAAACCCAGTAAGCTGTACAAATCAATCTTCTGCAAGCTGTCATGCATGCAATGAGAAGTATGAACAAGAAGTTGCTGATGTTTTGAAGGTAGGTCCTACAACTTCAGCATCTAGTCACTCAATGAGCTTGCCTTGGTTGCAACAGGTCAATGTGGATAAAGATAAACGATTGGATGTTGCAAAGACTAATGAAGAATTCACAAGTTTGAATACTACTATGTTGGGATTGCAAAAGAAGTGGGCTGATAATTGTCAGCGTCTTCATCACAATGAGTCATGTCCTGACTTAAATATATCCCAAACAAAGGTTCAACATCCCTCTCTTGATGGCTTACAATTTGGTTTGGGTATTAGAGAAAGCAGCAAGAAAGATCTATCAGTTGATCAAATCCAACATTGTAAACATGGTCTCAACATGCCTAAAGAGTTACGTAGTATTTACCCATCAGAGCAGACGTTACATGTTTCTTCAGAAACTTCTGGCATTGATACAGGAACTGACAAGGGAGCAGTTGGTTCAAAGAGTCGGCAAACTGACGTGCAGAAACCTTGGGTTGCCCCTTCCGCCAATATGAGTCAGGCTGATCACAGATCATCTTCCTCCCTTCCTTCTGTGACCACTGATTTGGGATTGGGAACGCTATATACATCAGCAACTCAGGAGCCAAATACCCCAAAAGTAAAAGATCATAGAGAGAGTATACGGCACTTTTCAGACTCCATTTCAGCTGATGTTGATGCTGTGAATGAAAATACTTCACACCAAATTGCTCAATCCTCTCCTTGCTCTGGTCCCATGGAAGGGAAACTGGATTCGTTAGATTTCAAGTCATTTAACCAGCTTCTTGCTGAAAGAGTTAGCTGGCAAGCAGAGGCCATATCTGTCATCAACCGAACCATGTCCTGCTGTAGATGGGGCACCGGAAAGCATAGTGGTTCACATTCTAGAGTAGATGTATGGCTTGCTTTCCTTGGACCTGATAGAGTTGGAAAGAAGAAAATTGCTTTAGCACTTGCAGAGATAATATTTGGAAACACAGAAAAGCTAATCTCTGTGGATATGAGTTCCCAAGACAGAGGCTACCCATTAAATGTGGTTTTTGAAAGCCAAAAGTCAATTTGTCATGACGTGCTACGAAGGAAGACAGTTGTAGACTATATTGCTGGGGAGTTGAGCAAACAGCCCCATTCAGTTGTATTTATTGAAAATGTAGATAAAGCTGATTTCCTGGTGCAGAATAGTTTGCTCCAGGCAAGAAGAACAGGTAAATTTCCAGACTCACATGGCAGGGAAATCAGCGTCAGTAATGCAATCTTTATTGTAACTTCGAGTGTCTTCAAAGGCGAACACTCTTTCCTTTTGGAGAAGGAGCATGTGTTTTCTGAGGATAAAATCCTTGAAGCCAAAAGATGTCAAATGCAGTTATTACTTGGACATTGTTCTGAGGATACCATCAGAAGCAGCAACGCAAATGTCAGGGTAACACTGGTGGGAAGAGAGGCCTCCAAATCAACAATCCTGAATAAAAGAAAACTGAGCGAAAGAAGTGACTCTGTAGAACAAGTAGCCAAATGCAAGGTACAGAAACAGGTCCTAGAGACATCAAGATCTTATCTAGATTTGAATATGCCTCTCCAGGACGTTGAAGAGGACTACTGGTTTGATGATTTCTGTAGTCAACTTGATGCCAGAATAACTTTTAAGCCCTTTGATTTCGATGCACTCGCCAAGAAAATCTTAAAAAGCATCAGTTCAAAGTTTCAGATGACATTTGGATCAGGGTTGAAGCTTGAAATTGAATATGAAGTCATGGCACAGATCCTAGCAGCCGCGTGGTTATCTGAGAAGAAAAGTGCTGTGGAGGATTGGATTGAAGATGTACTCGGCAAAAGCTTGAATGAAGCCTTGAAGAAATACCAACCTGAACCTCAGAAGTCCATGAAACTAGTTACATGGGAAGGGATTTTTGTTGAAGAGCAAGCTCCAGGAGTATGCCTTCCTGCTAATATTAACCTCAAGTAA 3270 0.4407 MPTPVSVARQCLTEEAARALDDAVAVARRRNHSQTTSLHAISALLALPSSPLRDACTRARSCSYSPRLQFKALELSVGVSLDRLPTTKSLEDDPPISNSLMAAIKRSQANQRRHPESFHLIQMHMHQQQQAASFLKVELKHFILSILDDPIVSRVFGEAGFRSCDIKIALLQPPIAQASTRFFRGRYPPLFFCNLTGSEMDRPGFNFPFMTNPGHKDGDENCRRIAEVLVRKTKKNPLLMGVYAKGTLMRFTDTVQRGRVGLLPADIAGLNMICIEKEIAEFFVEGGSEEKMILKFKELSRAVEQCSGPGIIVNFGELEAFVGDGVPGAAVNFVVSQLSSLLEIHGDKLWLVGVVGTSVIYSKFLTMFPTVEKDWDMHLLTMTSASPSIEGLYSKSSLMGSFVPFGGFFSTPPEFKNPVSCTNQSSASCHACNEKYEQEVADVLKVGPTTSASSHSMSLPWLQQVNVDKDKRLDVAKTNEEFTSLNTTMLGLQKKWADNCQRLHHNESCPDLNISQTKVQHPSLDGLQFGLGIRESSKKDLSVDQIQHCKHGLNMPKELRSIYPSEQTLHVSSETSGIDTGTDKGAVGSKSRQTDVQKPWVAPSANMSQADHRSSSSLPSVTTDLGLGTLYTSATQEPNTPKVKDHRESIRHFSDSISADVDAVNENTSHQIAQSSPCSGPMEGKLDSLDFKSFNQLLAERVSWQAEAISVINRTMSCCRWGTGKHSGSHSRVDVWLAFLGPDRVGKKKIALALAEIIFGNTEKLISVDMSSQDRGYPLNVVFESQKSICHDVLRRKTVVDYIAGELSKQPHSVVFIENVDKADFLVQNSLLQARRTGKFPDSHGREISVSNAIFIVTSSVFKGEHSFLLEKEHVFSEDKILEAKRCQMQLLLGHCSEDTIRSSNANVRVTLVGREASKSTILNKRKLSERSDSVEQVAKCKVQKQVLETSRSYLDLNMPLQDVEEDYWFDDFCSQLDARITFKPFDFDALAKKILKSISSKFQMTFGSGLKLEIEYEVMAQILAAAWLSEKKSAVEDWIEDVLGKSLNEALKKYQPEPQKSMKLVTWEGIFVEEQAPGVCLPANINLK 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1219 1089 MobiDBLite consensus disorder prediction 569 621 - -
Lele01g1219 1089 SUPERFAMILY Double Clp-N motif 12 118 IPR036628 -
Lele01g1219 1089 ProSiteProfiles Clp repeat (R) domain profile. 8 178 IPR004176 -
Lele01g1219 1089 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1058 - -
Lele01g1219 1089 Pfam AAA domain (Cdc48 subfamily) 738 862 IPR003959 GO:0005524|GO:0016887
Lele01g1219 1089 Gene3D - 10 172 IPR036628 -
Lele01g1219 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 687 1026 IPR027417 -
Lele01g1219 1089 Gene3D - 672 954 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1219 Lele-ChrLele01 7353530 7358347 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1219 01 7353530 7358347 Lele25g1689 25 24569210 24573396 CCT
Lele01g1219 01 7353530 7358347 Lele26g1689 26 20424285 20428780 CCT
Lele01g1219 01 7353530 7358347 Lele27g0400 27 3629132 3633399 CCT
Lele01g1219 01 7353530 7358347 Lele28g1693 28 19864495 19868976 CCT
Lele01g1219 01 7353530 7358347 Lele01g1219 01 7353530 7358347 ECH
Lele01g1219 01 7353530 7358347 Lele25g1154 25 7459199 7465760 ECH
Lele01g1219 01 7353530 7358347 Lele26g1153 26 7446381 7451113 ECH
Lele01g1219 01 7353530 7358347 Lele27g0927 27 17204610 17210856 ECH
Lele01g1219 01 7353530 7358347 Lele28g1146 28 7438307 7444097 ECH
Lele01g1219 01 7353530 7358347 Lele02g1489 02 19089372 19094181 ECH
Lele25g1154 25 7459199 7465760 Lele01g1219 01 7353530 7358347 ECH
Lele26g1153 26 7446381 7451113 Lele01g1219 01 7353530 7358347 ECH
Lele27g0927 27 17204610 17210856 Lele01g1219 01 7353530 7358347 ECH
Lele28g1146 28 7438307 7444097 Lele01g1219 01 7353530 7358347 ECH
Lele01g1219 01 7353530 7358347 Lele03g1232 03 7316094 7320925 hybridization
Lele01g1219 01 7353530 7358347 Lele04g1474 04 19938523 19943327 hybridization