Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1217 ATGGAGGGTGGTGAATATGGGAAACAAGAGGGGCTGCATCATAATAAGACTTCTGTGTTGCTTGAACTGGCAGCCTCAGATGATGTGAGTTTCAAAGATGCAGTTGAGGAAGAGGGTCTTGATGTTGATGAGGCGTGCTTATGGTATGGAAGGAGGATTGGCTTAAAGAAATTGAGCTATGAAGAGAGGACCCCTCTCATGATTGCTGCTATGTTTGGAAGCATGGCCGTATTACGTTATATACTCGGAACCGGTCGTGTTGATGTTAACCGGACTTGTGGATCAGATAGGGCTACCGCCCTTCATTGCGCTGTTGCTGGGGGTTCAGCCTCGTCCCCTGAGGTTGTTAAGCTCTTGCTTGATGCATGTGCTGATTCTAGTGCTGTTGATGCTAATGGTAACCAACCTTGTGACTTGATCGTCTCCGGGGTTAATTCAATCTTCAATTCGAGGAAGAGGATCCTACAAGCGATACTGAACGGTAAGGATGTTATTGATGACGGGGCATGTCTCTCATTTGAGGATACAGTTAGCCAGATGGAGGTACAGCAACTGCCAGATATGGCTGCATCTAAGAAAGATTATCCTATTGATCTTTCTCTTCCTGACATAAAGAGTGGGATTTATGGTACTGATGAGTTTAGGATGTATACATTCAAGGTAAAGCCTTGCTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCTGGAGAAAATGCTAGGCGACGGGATCCTAGAAAATATCATTATAGCTGTGTTCCTTGCCCCGAGTTTCGGAAGGGATCATGCAGCAAGGGAGATGCTTGTGAGTATGCACATGGTATTTTCGAGTGCTGGCTTCACCCTGCCCAGTATCGGACCCGGCTTTGCAAGGACGAGGCTGCTTGCACCCGAAGAGTTTGCTTTTTTGCTCATAAGCTTGAGGAGCTTCGCCCATTGTATCCTTGTACTGGTTCAGCTATACCTTCTCCCAGATCATCTTCATCAAGTTCTTGTTCATTGGATATGGGATCGCTTAGCCCTCTCTCGATGGGTTCTTCATCTGTCATGATACCTCCAGTCTCAACACCGCCTCTGACTCCTTCTGGTGCATCTTCTCCCGTTGGCGGAACCATGTGGCAGGCCCAATCTAATGGTGGAGTGCCTACCCTGCAACTCCCAAGAAGCAGACTGAAAACTGCTTCAAATGCTAGAGATGTCAATTTAGATATTGAGTTACTTGGACTAGAAAATCACCGGCGTAGGCAGCAGATGATGATGGATGAGATTTCTGGTCTTTCATCACCATCAAGCTGGAATAATTCTATGCCTGATAATCATTCTTTTCCTGTCTCTTTCGGGGATCAAGCTGGGGAGCTGAATAATAGGCTTGCATTGATGAAGCCTACAAACCTTGATGACATTTTCGGGTCAGTTGATCCTTCAATTTTGCCTAAATTACAGGGGATTTCACTAGACACTGCTGGAACTCAGTTGCAATCTCCAACTGGGTTCCAGGCTCTTCAGAATGCGAACCTGCATCTGCCAAACTATTCTTCTGGCCTTTCCAATTCAAATGGGATGGGATCGCCGTCTTCTGTGAATTATCCACCTGTATCAGCGGCAACCACAATGGCCTTGAATGCAAGACTTGCTGCATTTTCTAAGAGAAGCCAGAGCTTTATTGAGCGTAGCAGCGCAGTAAACCGTCATCCAGAGCTTACTTCTCCGGTTTCTTCAACAACAAAGGCTTCTGCTGTCTTATCAGACTGGGGATCCCCTGATGGAAAGCTGGACTGGGGCATCCATGGAGAAGAGTTGAATAAGCTGAGGAAATCTGCTTCCTTCGGATTTCGAAGCAGTAGGAGTACCCGAGTACCAGCAAATCTCGATGAACCAGATGTTTCTTGGGTTCAATCACTCGTAAAGGATGCTGCACCGCCAGAATCTGGTCAATTTAGTGTGGAAGAACAGCAAAAGCAGCAGCTACAATGCCATCGTAACAATGGAACAGATGTAGGTCCAGCTTGGATGGAACAATTTAACATTGAGCAGGAGCAGATGGTAGCATGA 2064 0.4646 MEGGEYGKQEGLHHNKTSVLLELAASDDVSFKDAVEEEGLDVDEACLWYGRRIGLKKLSYEERTPLMIAAMFGSMAVLRYILGTGRVDVNRTCGSDRATALHCAVAGGSASSPEVVKLLLDACADSSAVDANGNQPCDLIVSGVNSIFNSRKRILQAILNGKDVIDDGACLSFEDTVSQMEVQQLPDMAASKKDYPIDLSLPDIKSGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDEAACTRRVCFFAHKLEELRPLYPCTGSAIPSPRSSSSSSCSLDMGSLSPLSMGSSSVMIPPVSTPPLTPSGASSPVGGTMWQAQSNGGVPTLQLPRSRLKTASNARDVNLDIELLGLENHRRRQQMMMDEISGLSSPSSWNNSMPDNHSFPVSFGDQAGELNNRLALMKPTNLDDIFGSVDPSILPKLQGISLDTAGTQLQSPTGFQALQNANLHLPNYSSGLSNSNGMGSPSSVNYPPVSAATTMALNARLAAFSKRSQSFIERSSAVNRHPELTSPVSSTTKASAVLSDWGSPDGKLDWGIHGEELNKLRKSASFGFRSSRSTRVPANLDEPDVSWVQSLVKDAAPPESGQFSVEEQQKQQLQCHRNNGTDVGPAWMEQFNIEQEQMVA 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1217 687 SMART ANK_2a 96 128 IPR002110 GO:0005515
Lele01g1217 687 SMART ANK_2a 61 91 IPR002110 GO:0005515
Lele01g1217 687 MobiDBLite consensus disorder prediction 349 371 - -
Lele01g1217 687 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 258 278 IPR000571 GO:0046872
Lele01g1217 687 FunFam Zinc finger CCCH domain-containing protein 66 211 279 - -
Lele01g1217 687 Gene3D - 13 158 IPR036770 -
Lele01g1217 687 ProSiteProfiles Zinc finger C3H1-type profile. 258 280 IPR000571 GO:0046872
Lele01g1217 687 PANTHER UNKEMPT FAMILY MEMBER 22 641 IPR045234 -
Lele01g1217 687 SUPERFAMILY Ankyrin repeat 20 141 IPR036770 -
Lele01g1217 687 Pfam Ankyrin repeats (many copies) 62 120 IPR002110 GO:0005515
Lele01g1217 687 Gene3D - 253 316 - -
Lele01g1217 687 ProSiteProfiles Ankyrin repeat profile. 96 131 IPR002110 GO:0005515
Lele01g1217 687 SMART c3hfinal6 253 279 IPR000571 GO:0046872
Lele01g1217 687 SMART c3hfinal6 288 311 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1217 Lele-ChrLele01 7344446 7346509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1217 18 682 C2H2 Transcription Factor Family AT5G12850 39.583 6.27e-145 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele01g1217 Ank_4 1.4e-08 CL0465