Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1213 ATGCGCGATGAAACCTCTTGGTCTTCAGCTGAGGAGTGGTTTTTCTTGCTCTTTTCGGTTGCGGGAGATTCGCAAGGATTTGGACGTGTAAATAATCTCGAGCACGTTTTCTTTGCTCAGAACCAGACTTCAATGGCGGTGGAGGAATTGGAGTACCCTGGGTTCAGAAAGCGCAAACGAGGGTATGGAAGAAGAAAACTCGTCGTCAATGATAGAGTGGAGGTGAGGAGTATGGAAGATGGTTTTTTGGGTTCATGGCACCCAGGGACTGTTGTCCAATGTGGGAAGCAGATACGTTATGTAAAATATGACCATGTTTTAGATGATAATGGGTCAAAACATCTTGTCGATATAGTGAATGTTCCAGCTATTATGGATGGCGCCAGTTCCAAAATTTACAATGAACGTGGACTTATTAGACCAATACCACCTTTGAAGGAGTTTGGGTCATGGGACCTTCTGTTTGGTCTATGTGTTGATGCGTACTGTCTTGAAGCTTGGTGGGAAGGTGTTATTTTTGATCATTATGATGGGAAGGAGGAGAGATCTGTATTTTTCCCAGATTTGGGCGATGAAATGAAGATAAAAATTGATCATTTGCGTATTACTCATAACTGGAGTGAAGTTACAGGGAAGTGGGAGAGGCGGGGCATGTGGATATTTCTTGAATTGATTGAAGAGTTTGAACTGGATAATTATGTTGCAGTTTCATTAAAGCAAATCTGGTATGATGTGCGTACCAAAGAAGATTTCAATAAGATTAAAGACTGGACTTGTAATGTGAAAGACGTGTGGAGAGGTCTCGTACTAGAGGTAATTAATGACTACTTTTCACTTACACTGACAGAAGTCTTGGATCTTTCAAAAGATCTCTTGACAGAAGCACCAGAACCAGAGTCAGGTGAACCTACTGCGGATTTTCACTTAAATCCAGAAAGAAATTCAGACAACTTTGATTCTTTTTCAAATTCTGGTAATCAGATAACTAGCAACTCAAATCTTCTTTATGATGCCGGTCCTAGTAATGCAATTGTCCATGACATAAGTTTGGCTGAGAACCATTTGGAAAAAGGCGAGGTGTCAAATTTCTTGGATGCTGATCAAAACGGTGGTCGCATCATTCTTATCCAGGAGAAATATGATTTGGAGACCTTGGGGGACGGAGTGTCAAATATGACTGAGAAGGAAGGTCTGGTGCAGAAGGAATCTATATCACCTGAAGAAGAGATGTTACCAGATATTCCTGAAGGAATTTCTGGGCAGGATGCTGGTACTTCTAGTGAAGTAAATTATGGTGCTGGGTGTCATAAAAGAAATACACAAGGGGGATTATCAACTTGCAGAAGGGCGACTGATTGGGAACCTCTGATACTTTCTGAAGTTGAACTCTGCCCTGATTCTGTTCATCAATATGCACTTGCATCTAATAAGAGGACGATCAGGGAACAACTGAAGACAAATGTCAGAAAACATATCGCATATCTTGGATGGAAAATTGAGTGGAAGCAACATAAAAGTGGTTATCAACAAAGGCAATATAGGTACACCTCACCTGAGATACAGGGAAAACAGGTTGTTTACATGTCACTTTGTGAAGTTTGTAAACATATTGAAAAGGGCACCAATGTGGATTCTTCGTGGTCCCATGAGGATAAAAAAAGGATGCATCCTACAATTGACAATAATATTTCACATCCTGCAATTTTGCGACCTCCTTCTGGTGAAGACAAAGTTGAACCCGAATTTTGCCCTGAAGCTGTTTTGAGATATTACTTGCTTCTATATAAGAGGGGCCCCAATAATGTTAAAACATTTATAATATCAAAGGCAAGAAAACACCTGTTAGCAGAAGGATGGAATTTTGAGTATCCAACAATAAGAGGAAGGGCAATAATCTACATTTCACCGCAAAATCAGCATTTTTCCTCCCTTAGAGTAGCATGTGGAGAATGTATTAAAGAATGTCTTCCTAAGTGGATTAGTTCGGGAATGATACCTCTGGATGTTTCAAGCATAAATGAAGAGAACACTGGTCCGGTTGACAGTGATAAATTATTGTGTTGTGTGTCCCAATTGCTTCAGAAGGAGCCTGAATTGTGTTGTGTAAACGGTGCACCAGCAAGCAGATCAATTGTGCAATGCAAGCCAAAACCCTTAAGGAAGCTAAAGTCCCAAGATAATCAGAGAAGGATGCATTCTACAATTGACAGTAATATCTCACTTCCTGCAATTTTGCCGCCTCCTTCTGTTGAAGATGTAATTGTACCTGAATTTTGTCCTAACGCTGTTTTGAGATATTACATATATTCATCAGAGAAGAGCCTCAAGGATGTTAAAAAACGTATGATACTGAAGGCAAGAAAACACCTGTTAGCAGAAGGATGGAAGCTTGAGTATCCAACCATTAGAGGAAAGGGAATGATCTACATTTCACCACAAAATCTGCGTTTTGGCTCACTTCGAGTAGCGTGTGGAGCATGTATTAAACAATGTCTATCTGAGTGGGTTAGTTCTGCAAGGATGCCTCCAGATGGTTTGGGCATAAATGAAAAGAAAATGAGTCAGGTTGACCGTAATAAACTATTGTGCTATGTGTCCCAATTGCTTCAAAAACAGCCTGAATTGTCTGATTTAAGTGGGGTACCAGAAAGCCTATCAACTGGGCATTGCAAGCTCAAACCCTCCAGGAATCTAAAGTCCAGGCCACCTAAGCTCCAGAAAAAAAGATTACCTATTTGGTTACAAAGATCAAGCAAAAGGGTCCAGAAGGTCTGTGCTCCTTGTCCATCACACCAGAAAGCTCAAAATGTCCTGTCCTGGTTAATAGACTGCAATGTGCTGTTACCAAGGTCTAAGGTCCATTACCGGGAAAGAGGAACGGGTTGTTCTATGGCTGAGGGGCGAATAACTCGTGATGGGGTCAAGTGCAGCTGTTGTCAGAAGCTATATAGTCTTGGTAGCTTTGAAGGTCATGCCACTGGTCGTCGTAATTGCAGGTCAGCAGCTGCTAATATTGTTTTGGAAAATGGCAAGTCACTCCTAGATTTCCAGATGCAGATAATGAATGAGCATAGGACAAGAGGAACTACACAAACACCACTGGAAAGTGTGTATCAAGAAGATAATGATGGAATTTGTTCTGTTTGTCAATATGGCGGTGAACTAATATTATGTGATAATTGCCCGTCATCTTTTCATAAAAGCTGCCTAGGTTTGGAGGATATCCCTGAAGGGGACTGGTTTTGCCCATCATGTTGTTGTGGAATTTGCCGCCAAAGTAACACTGAAGGGGCTGATGATGAAAAACTTTTGACTTGCAGTCAATGTGAACATAAATTTCATGCCAAGTGCTTGGGAAAAGGGTCTGTAACGGTGTCAGGAAGACATATGAAAAATTGGTTTTGTGGAAAAAGCTGCGAAAAGATATATGTAGGCCTTCATAAGCTATTAGGAGAACCTGTTGCAGTGGGCGCAAACAATTTAAACTGGACTTTGTGGAAGTGTGTTGACTCTGAGAATTGTGATCTTGGGAATGGTAGAAATGACCTAGAGGTAGAGAGTTACAGCAAACTCAATGTGGCTCTTTCAGTGATGCATGAATGTTTTGAGCCCTTGAAGGAATCTTACTCAGGCAGGGATCTCATGGAAGATGTTATTTTCAGCAGATGGTCAAAGCTTAATCGATTGAACTTCCAAGGTTTCTATATTGTACTTCTGGAGAGAAATGAAGAAGTGATAACTGTGGCAACTGTTAGGGTCTATGGAGAGAAGGTAGCAGAAGTACCTCTTGTTGGAACCAGATTTCAGTATCGTCGCCTTGGAATGTGTCGCATTTTAATGGAAGAGCTTGAAAAGAGGCTCGTGCAACTAGGGGTGGAGAGGATAGTTTTGCCTGCTGTTCCAAGTGTGCTAGACACGTGGACCAATTCTTTTGGCTTTTCAAAGATGACAAATTCTGAGAGAGCACAGTTTCTGGACTGTACTTTTCTTGACTTTCAAGATACCGTCATGTGCCAGAAACTTTTGACCAAGATTCGTACAGCTTTAGTTTTGTCAACGGTGAGACATACAAAACCACATGATGTTTTATCTGTAAGTCGTGGTACTGGTTTTGATCAGCCCAGTCCAGCATCTGAAGTATATCAGGCGGAAGAGATTGACGGCAGAAATGAGACGTTGGATCTACAGATGGTGGATGCTTTTGCCGGCGACAACGATGATTGTCTTAGTAATGATGCCCGTAGTCCAGTTGTTTTGGCAAAGCCAGCGAATTCTGAGGGCGAACAATTGCAAAACAGAAGCATTCCAGAATGCTCACTTGAAGAAGGCCGCTTAAAACATGTTTCCACCAGTAATGTGGAATGTTCTGCAATGGCTTCATATGGCGTTTTACGCTCATTTTTTGCTCTTGTGATACTAGTTTGTCTTCAATGGCGTTTAGCTGCATCTTCTGGTTTGTTACCCTTCAGAAACCACCACCACAACCGCTCATCACACCACCATCATGGACAAAATATGATCCAAGCCAACAAATCTTGTGCTTTGTTCGTGGGAACTTGGGTTCGTGACGAAACTTATCCGCTTTACCAATCTTCTGACTGTCCAATCATTGACGCTGAATTCAACTGTCAAATGTACGGTCGCCCAGATTCTGATTACCTCAAATACAGATGGAAGCCCCTTGATTGCGAGCTCCCAAGGTTCAATGGGATTGAATTTTTGCTGAACTTGAAGGGCAAAACTATGATGTTTGTGGGTGACTCCCTGGGACGCAACCAATGGCAGTCATTAATTTGTATGATATATGGTGCAGTGCCTCGTGCAAAAACGCAAATGGTCAGGGGAGACCCACTTTCAACCTTCAGATTCTTGGATTATGAAGTGACACTTTCATTCTACAGATCACCATATCTGGTAGACGTTGAAGTGATGGGAGGGAAGAGAGTTCTAAGGCTGGATGAGGTAGATGGGAATGGTGAAGTATGGAGGAATGCTGATGTACTGTCCTTTAACACAGGACATTGGTGGACTCATGAAGGATCCCTTCAAGGATGGGATTATGTTGAATTAAGCGGCAAATTCTATCCAGTCATGAACCGTTTGGCAGCTTTAGAAAGAGGTCTCAAAACTTGGTCTAATTGGGTGGATGCTAATATTGATAGAAGCAGAACTCAAGTATTCTTCCAGGCCATTTCTCCCACACATTACAACCCCAGAGAATGGAATGGGATAGGGAAAGCAGAAACAACAACAAAGAATTGCTATGGGGAAACAGCACCAATAAGGAGCACAACATACCCAGGAGCATATCCGGAGCAGATGAGGATAGTGGAGATGGTGATAAAGGGAATGGCAAGGCCTGCATATTTACTTGACATTACAATGCTATCAGCTTTGAGGAAAGATGGCCATCCTTCTATTTATAGTGGTGATTTCAGTAATCAGCAGAGGGCTAACCCTGACTTCTCTGCAGATTGCAGCCATTGGTGCCTTCCTGGCTTGCCTGATACTTGGAATCAACTCTTCTATACTGCCTTGTTCTTCTTCTAG 5550 0.4196 MRDETSWSSAEEWFFLLFSVAGDSQGFGRVNNLEHVFFAQNQTSMAVEELEYPGFRKRKRGYGRRKLVVNDRVEVRSMEDGFLGSWHPGTVVQCGKQIRYVKYDHVLDDNGSKHLVDIVNVPAIMDGASSKIYNERGLIRPIPPLKEFGSWDLLFGLCVDAYCLEAWWEGVIFDHYDGKEERSVFFPDLGDEMKIKIDHLRITHNWSEVTGKWERRGMWIFLELIEEFELDNYVAVSLKQIWYDVRTKEDFNKIKDWTCNVKDVWRGLVLEVINDYFSLTLTEVLDLSKDLLTEAPEPESGEPTADFHLNPERNSDNFDSFSNSGNQITSNSNLLYDAGPSNAIVHDISLAENHLEKGEVSNFLDADQNGGRIILIQEKYDLETLGDGVSNMTEKEGLVQKESISPEEEMLPDIPEGISGQDAGTSSEVNYGAGCHKRNTQGGLSTCRRATDWEPLILSEVELCPDSVHQYALASNKRTIREQLKTNVRKHIAYLGWKIEWKQHKSGYQQRQYRYTSPEIQGKQVVYMSLCEVCKHIEKGTNVDSSWSHEDKKRMHPTIDNNISHPAILRPPSGEDKVEPEFCPEAVLRYYLLLYKRGPNNVKTFIISKARKHLLAEGWNFEYPTIRGRAIIYISPQNQHFSSLRVACGECIKECLPKWISSGMIPLDVSSINEENTGPVDSDKLLCCVSQLLQKEPELCCVNGAPASRSIVQCKPKPLRKLKSQDNQRRMHSTIDSNISLPAILPPPSVEDVIVPEFCPNAVLRYYIYSSEKSLKDVKKRMILKARKHLLAEGWKLEYPTIRGKGMIYISPQNLRFGSLRVACGACIKQCLSEWVSSARMPPDGLGINEKKMSQVDRNKLLCYVSQLLQKQPELSDLSGVPESLSTGHCKLKPSRNLKSRPPKLQKKRLPIWLQRSSKRVQKVCAPCPSHQKAQNVLSWLIDCNVLLPRSKVHYRERGTGCSMAEGRITRDGVKCSCCQKLYSLGSFEGHATGRRNCRSAAANIVLENGKSLLDFQMQIMNEHRTRGTTQTPLESVYQEDNDGICSVCQYGGELILCDNCPSSFHKSCLGLEDIPEGDWFCPSCCCGICRQSNTEGADDEKLLTCSQCEHKFHAKCLGKGSVTVSGRHMKNWFCGKSCEKIYVGLHKLLGEPVAVGANNLNWTLWKCVDSENCDLGNGRNDLEVESYSKLNVALSVMHECFEPLKESYSGRDLMEDVIFSRWSKLNRLNFQGFYIVLLERNEEVITVATVRVYGEKVAEVPLVGTRFQYRRLGMCRILMEELEKRLVQLGVERIVLPAVPSVLDTWTNSFGFSKMTNSERAQFLDCTFLDFQDTVMCQKLLTKIRTALVLSTVRHTKPHDVLSVSRGTGFDQPSPASEVYQAEEIDGRNETLDLQMVDAFAGDNDDCLSNDARSPVVLAKPANSEGEQLQNRSIPECSLEEGRLKHVSTSNVECSAMASYGVLRSFFALVILVCLQWRLAASSGLLPFRNHHHNRSSHHHHGQNMIQANKSCALFVGTWVRDETYPLYQSSDCPIIDAEFNCQMYGRPDSDYLKYRWKPLDCELPRFNGIEFLLNLKGKTMMFVGDSLGRNQWQSLICMIYGAVPRAKTQMVRGDPLSTFRFLDYEVTLSFYRSPYLVDVEVMGGKRVLRLDEVDGNGEVWRNADVLSFNTGHWWTHEGSLQGWDYVELSGKFYPVMNRLAALERGLKTWSNWVDANIDRSRTQVFFQAISPTHYNPREWNGIGKAETTTKNCYGETAPIRSTTYPGAYPEQMRIVEMVIKGMARPAYLLDITMLSALRKDGHPSIYSGDFSNQQRANPDFSADCSHWCLPGLPDTWNQLFYTALFFF 1849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1213 1849 Gene3D - 1194 1321 - -
Lele01g1213 1849 CDD PHD1_AIRE 1046 1085 - -
Lele01g1213 1849 ProSiteProfiles Zinc finger PHD-type profile. 1084 1141 IPR019787 -
Lele01g1213 1849 ProSiteProfiles Zinc finger PHD-type profile. 1043 1088 IPR019787 -
Lele01g1213 1849 SUPERFAMILY FYVE/PHD zinc finger 1086 1136 IPR011011 -
Lele01g1213 1849 Pfam PMR5 N terminal Domain 1512 1564 IPR025846 -
Lele01g1213 1849 Pfam Agenet domain 70 144 IPR008395 -
Lele01g1213 1849 PANTHER PHD FINGER PROTEIN 12 760 1407 IPR042163 GO:0003714|GO:0045892
Lele01g1213 1849 SMART PHD_3 1045 1086 IPR001965 -
Lele01g1213 1849 SMART PHD_3 1087 1139 IPR001965 -
Lele01g1213 1849 Pfam PHD-finger 1045 1087 IPR019787 -
Lele01g1213 1849 Pfam Tify domain binding domain 967 1019 IPR032308 -
Lele01g1213 1849 SMART ring_2 1046 1085 IPR001841 -
Lele01g1213 1849 SMART ring_2 1087 1142 IPR001841 -
Lele01g1213 1849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1086 1142 IPR013083 -
Lele01g1213 1849 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1181 1342 IPR000182 GO:0016747
Lele01g1213 1849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1035 1085 IPR013083 -
Lele01g1213 1849 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1218 1322 IPR016181 -
Lele01g1213 1849 SUPERFAMILY FYVE/PHD zinc finger 1031 1085 IPR011011 -
Lele01g1213 1849 CDD NAT_SF 1236 1297 - -
Lele01g1213 1849 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 1565 1844 IPR026057 GO:0016740
Lele01g1213 1849 SMART agenet_At_2 65 126 IPR014002 -
Lele01g1213 1849 SMART agenet_At_2 151 208 IPR014002 -
Lele01g1213 1849 MobiDBLite consensus disorder prediction 294 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1213 Lele-ChrLele01 7290296 7304754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1213 76 285 PHD Transcription Factor Family AT5G58610 46.262 7.39e-57 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele01g1213 PC-Esterase 5.3e-92 CL0264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1213 01 7290296 7304754 Lele25g1685 25 24481171 24491055 CCT
Lele01g1213 01 7290296 7304754 Lele27g0403 27 3703462 3713054 CCT
Lele01g1213 01 7290296 7304754 Lele28g1687 28 19784625 19791341 CCT
Lele01g1213 01 7290296 7304754 Lele01g1213 01 7290296 7304754 ECH
Lele01g1213 01 7290296 7304754 Lele03g1226 03 7252443 7268149 hybridization
Lele01g1213 01 7290296 7304754 Lele04g1467 04 19885876 19896997 hybridization