Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1185 ATGAAACGCATATTCTGCGATCTGATTACAAGAACCTTCACAGTTACAATGAACCAGAAGGATATAGTTAGATTCTTGACTACAACCATCGATAGTTTCATTCAAGATCGGTTAATCGACAAAGAACGAAGGATTCAACACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGAAAGCATTGATAAAGACAGCGAAGTTCAGTACTCTGATCAAGCAGTATTAGCAAATCTTGATTGGGGTATGGAAGCTCTTGAAGAAGCTATCAATACTTATAATATGGAAACTAAGATTGCTCGTTTAGACTATGCTGAGAAGATGTTACAAGTTTGTGCCATGTTGAATCCTAATCGAAAAACTGCTGGCGTGCCAAATTTTTACCTCTCTGCTTGGGCTCACCTTAATCTCTCCTACCTATGGAAGTGTCGGAACAATGTGCAAAACTCAATTTTTCATGCTCTTGAGATGTTCATCGTTGACCCTTTCTTCTCAAGGATTGATTTTGCTCCAGAGCTTTGGAAAGATCTGTTTCTTCCACACATGAGTTCCATTGTAGGTTGGTATTCAGAGGAGAGGCACAGGCTCATGATGGAAGTTATACCTGATTCTTCAGATCTGTCATTTACAGCTGATTTTGATCAGTTCTTTAATGAGTCTTTGATTTATACTATGAGGCCACATCAAGTAGAGAAACTTCAAAAGCTTGAGAAGCTTTATGGAGAATCATTGGACAAAAACACAATACTTTATGCTAAGTATTATAAGGATTATATCAGCCCTGATTCAGCAACCTCCAGCAAGAAGGCTCCAATGTTACCGATTGCCGAGCCGCCGGTGACACCTCTGCATGAGTTGAGTTGCTCCATTCCTGATTATGTAAAATTTGGTCCTATATTGCCTAAGAGCGCTGGGTTTTCTCTTGTTCTGAAATCTGAAGATGGTGCAAATGAAACTATCAGAGGGAATGTGGCTTCCAGGCATCCACAAAAAGCAGAGAAGTCATCATCTACATCGGGTGCTAAGGAGAGAACCGTTGGAGCGTATGAAGATTCAGATTATGAACTCAATGATTCATACATTGATCCAGATAGGAAAACTCAAACTATTGTGCCTCCAAGAATTAACACTATCAAGGGTGAGGATATTGAGCCAAAAGTACATCATCAATCCAACCAGAGGAATCAAATATATTCTCCAGTTTTCTCTCCTTTGGATTCTCCTAGAGCTACCCCTAAAAACTCATCTTTAATTCATGAGATACACACTAAAGGAGAACCCAAATCTTTGCGCTTATTGTCTCGGCGATTCTCAGACTCGAGTATTTCCAACTCTTCACCAATATCTCCACACATGAGTACTGATCACAGTATTAGCTCAGAAGATTCTGATAATGAAATAATGGGCGTGAAGAACAATCAGAGGAAAAACCATTACTCAGAAAAGATTATTAATCATGAGAAAGAGAATAACCTCTCATTCAATGATAATTCCCTTTATGAGAGCCATGAGGGAAATAGCAGCAGTAGTTTATCGCTGAAATCAGAGAAGATTGGAGTTCAATCAAGACCACCCAAAGATTTTGTTTGCCCTATCACAGGCCAGATATTTTGTGATCCTGTCACACTTGAAACTGGTCAGACATATGAAAGAAAAGCAATTCAAGAATGGCTCAAAACAGGAAACACAACATGTCCCATTACAAGACAATCTCTCTCTGCTAGCATACTACCTAAAACAAACTATGTCTTGAAGAGATTGATAACATCATGGAAAGAACAACATCCAGAACTAGCTCAGGAGTTCTTGAATTCGGACTCGTTACGGGCTTCTTTAAATTCTCCCTCTGTCAAAGATATCCCTGTGGTCTCTAGCATGCACAAAACAGTTGACTCACCAGCTCATAAGAATGCAAATGATTATGTTAGACAAAGGAGCAAAAAATTTATGCAGGTTTATGTTGCATCCTCACCAACTAGTGTAATATCTCAAGCTGCAGTTGAAACAATTATAAATTGTTTGAAGCCTTACATTTCAAGTCTCTGCACATCAGAAGACTTGGAAGAATGTGAAGATTCTGTATTGGCAATAGCTAGATTATGGAAGGACGCAAAGAATGATCCTCATATTCATTCTAATTTATCAAATCCAACTGTTATAAACGGTTTAGTTGAAATACTTTCTGCTTCTCTAAATAGAGAAGCTCTGAGAACATCAATTTATATCCTGTCTGAGCTAATTTTTGCAGATGAAAGTGTTGGAGAAATTCTCTCCAATGTTGACTCTGATTTCGATTGCTTGGCTACTCTGCTTAAGAATGGTTTAATTGAGGCTGCTGTTCTAATTTACCAACTAAGGCCGGTTTACGATCAACTTTCTTCTCATGAACTGATACCCTCCATTGTTCATCTGATCCAGAACAAAAATGAGGAGTTCGACGATCTTCGTTTCCTTATCGATCCCAGAGATGCAGCTGTGGCGATTCTTGAGCAGATTTTATTAGGAGGGAATGAATATAGCAGGTCCCTCAATGCTTTGAGTGTTATTTCAGCAAATGGGATTCCAATATTGGTTAAGTATATGGAAAGAATGGAAGGAAGGAGATCTGTTGTTTCCATACTTCTATGCTGTATGCAAGCTGAAAAAAGTTGCAGGGGCTTAATTGCAAAAAGAATTGAATTATCTCCTGTTCTTGAATTGTTTCATTCTGGAAATGACAGTGTCAGAGGAATATGTGTGGAGTTTCTCTCACAGCTTGTCCAATTGCATAAGAGGACAATGTGCAACAAGATATTGCAGATTATCAAGGATGAGGGAGCATTTAGTACCATGCATACATTTCTTGTGTATCTTCAGATGGCTTCCATGGAGCATCAACTTTCAGTTGCTAGTCTTTTGCTTCAGCTTGATCTCCTGGTTGAGCCACGAAAGATGAGCATTTTCAGGGAAGAAGCTGTAGAGACACTGATAGAATCACTTTGGCGAAAGGACTTCTCAAATACTCAGACAAGGGCTTTAGATGCTTTACTGCTTCTTATAGGCCAGCTCACTTCTGCAGGAAAGTCATACACTGAAGCCTGGCTGCTTAAGACTGCAGGATTTGACCAAACTTACAATGCTCTAATGAAAGTTGAGCAGTTGGAAAAATATGACAACGATATGGTGGAAACAATGGATGAAGAAAATGCTATGAGCTCTTGGCAGAAAAGGGTAGCCTTTGTTCTTTGCAACCATGAAAAGGGTTCCATATTTAAAGCTTTAGAAGAATGCCTCAAGAGTACTTCCTTAGAGACAGCAAAATCATGCCTTGTCGTTGCCACGTGGCTCACACACATGCTCTCAAACATTCCTGATACTGGTATAAGGGATGTTGCTCGAATATCCTTGCTTGAGGAACTTATAAACGTCCTTCAATCATCGAAGAACCTGGAGGAAATGATCCTAGCTACCCTTGCTTTGAAGAACTTTCTTAATGATCCAATTGCTCTTGAAGCACTAGGATCTTATGCCAAAAGCATCTATAAAACATTGAGAAAGTTGAAGAAATATTCTGTGGTGGCAGTTGATATTATGAAAGCCTTGCTGAACTTAAAATCTGTTGATGTGACAGCATTGTGGAGTTGTAAGGAAGTCGTTGAGCTAGATTTGAGCTCAAATGGAGAGGTACTTTCTTTGCTCTATGTGAATGGTCGGGTCTTGAGTGGACACTCTGATGGAACCATGAAGGTGTGGGATTCTAGGAAGAGAGTATTAAGATTGATTCAAGAAACTCATGAGCACACTAAAGCTGTAACATGTCTCTACTCTTCAGGCGATAAACTATACAGTGGTTCCTTAGACAAAACCATCCGGGTATGGACGATGAAATATGATGAGATTCAATGTATTCAAGTTCATGATATCAAAGAGGCAGTGTATGAGTTGATAGCAAATGATAAATTGGCATGCTACGTAACTCAAGGAACTGGAGCTAAGGTGTATAATTGGTCTGATGCTCCAAAGCTCATTAATTTCAACAAACATGTGAAATGCCTTGCAATGTCTGGGAACAAACTGTATTGTGGTTGCTCTGGTTACAGTGTTCAGGAGGTAGACTTGTTGAATCATACATCAAATACAATTTTATCAGGGACAAGAAAATTGCTGGGAAAACAAACTATTCACTCCCTTCTGATTTATGATGATTTCCTCATCGCTGGTGGTTCTTTGGCTGATTCGACTGCAGGAAAGATATTGTCGCTGTCGTCGAAAGCAGCGGTGGGGTCACTCTCAACAGGACTAGAAATCAACCGTATGGCCATGAACAGTGACTTTGTATTTACAGGCACTAAATGTGGCACTATTGAGGTATGGCTAAAGTATAAGCTAAGCAGGGTTGCTTCCATAAAAATGGCTGGTGGTCACACAAAAATCACGTCATTAGCATCAGATTCAGATGGTGTTATGCTTTTTGTTGGTTCCTCTGACGGCAAGATCCAGGTCGGCTTGGGCTTTGGATTAATGATGCTAAATGGGGACATAGGGACAATTTATGCAACTGTCACTGTTTCACCTAATTTTCTTGCTATTCGTGCATTAGCTTGGCTGGAATCATATCATGCGCGCATCTTGTGCCGGGCAGAATATCTGCCCAATCTTGAAGAATCTCTTGAGAAACAGGTCTTTTGCAGAAAGGCAATTCTTGCTGCATCTGGAGTTTTCACATTCTTGGTAATATATGATTCTCATTTCTTGATATCTGTCTGTACATGTGGACAGAGGCTTGTACTTAGAAATCGATTTCAAGGCACACTTCATAATACCAACACAGTTTCCAAAGTAGCAGCCATCTATTCTACTTCAAATGACTTTCTAGCAGATGAGGCTCTGAATTTCAAGAGGCAGTTGAACGAGGGCCAGCTTCAATAG 4908 0.3975 MKRIFCDLITRTFTVTMNQKDIVRFLTTTIDSFIQDRLIDKERRIQHKEQCAERLAAEDESIDKDSEVQYSDQAVLANLDWGMEALEEAINTYNMETKIARLDYAEKMLQVCAMLNPNRKTAGVPNFYLSAWAHLNLSYLWKCRNNVQNSIFHALEMFIVDPFFSRIDFAPELWKDLFLPHMSSIVGWYSEERHRLMMEVIPDSSDLSFTADFDQFFNESLIYTMRPHQVEKLQKLEKLYGESLDKNTILYAKYYKDYISPDSATSSKKAPMLPIAEPPVTPLHELSCSIPDYVKFGPILPKSAGFSLVLKSEDGANETIRGNVASRHPQKAEKSSSTSGAKERTVGAYEDSDYELNDSYIDPDRKTQTIVPPRINTIKGEDIEPKVHHQSNQRNQIYSPVFSPLDSPRATPKNSSLIHEIHTKGEPKSLRLLSRRFSDSSISNSSPISPHMSTDHSISSEDSDNEIMGVKNNQRKNHYSEKIINHEKENNLSFNDNSLYESHEGNSSSSLSLKSEKIGVQSRPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLKTGNTTCPITRQSLSASILPKTNYVLKRLITSWKEQHPELAQEFLNSDSLRASLNSPSVKDIPVVSSMHKTVDSPAHKNANDYVRQRSKKFMQVYVASSPTSVISQAAVETIINCLKPYISSLCTSEDLEECEDSVLAIARLWKDAKNDPHIHSNLSNPTVINGLVEILSASLNREALRTSIYILSELIFADESVGEILSNVDSDFDCLATLLKNGLIEAAVLIYQLRPVYDQLSSHELIPSIVHLIQNKNEEFDDLRFLIDPRDAAVAILEQILLGGNEYSRSLNALSVISANGIPILVKYMERMEGRRSVVSILLCCMQAEKSCRGLIAKRIELSPVLELFHSGNDSVRGICVEFLSQLVQLHKRTMCNKILQIIKDEGAFSTMHTFLVYLQMASMEHQLSVASLLLQLDLLVEPRKMSIFREEAVETLIESLWRKDFSNTQTRALDALLLLIGQLTSAGKSYTEAWLLKTAGFDQTYNALMKVEQLEKYDNDMVETMDEENAMSSWQKRVAFVLCNHEKGSIFKALEECLKSTSLETAKSCLVVATWLTHMLSNIPDTGIRDVARISLLEELINVLQSSKNLEEMILATLALKNFLNDPIALEALGSYAKSIYKTLRKLKKYSVVAVDIMKALLNLKSVDVTALWSCKEVVELDLSSNGEVLSLLYVNGRVLSGHSDGTMKVWDSRKRVLRLIQETHEHTKAVTCLYSSGDKLYSGSLDKTIRVWTMKYDEIQCIQVHDIKEAVYELIANDKLACYVTQGTGAKVYNWSDAPKLINFNKHVKCLAMSGNKLYCGCSGYSVQEVDLLNHTSNTILSGTRKLLGKQTIHSLLIYDDFLIAGGSLADSTAGKILSLSSKAAVGSLSTGLEINRMAMNSDFVFTGTKCGTIEVWLKYKLSRVASIKMAGGHTKITSLASDSDGVMLFVGSSDGKIQVGLGFGLMMLNGDIGTIYATVTVSPNFLAIRALAWLESYHARILCRAEYLPNLEESLEKQVFCRKAILAASGVFTFLVIYDSHFLISVCTCGQRLVLRNRFQGTLHNTNTVSKVAAIYSTSNDFLADEALNFKRQLNEGQLQ 1635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1185 1635 MobiDBLite consensus disorder prediction 495 514 - -
Lele01g1185 1635 CDD RING-Ubox_PUB 528 570 IPR045210 -
Lele01g1185 1635 SUPERFAMILY WD40 repeat-like 1217 1494 IPR036322 GO:0005515
Lele01g1185 1635 MobiDBLite consensus disorder prediction 390 418 - -
Lele01g1185 1635 SMART WD40_4 1416 1452 IPR001680 GO:0005515
Lele01g1185 1635 SMART WD40_4 1455 1496 IPR001680 GO:0005515
Lele01g1185 1635 SMART WD40_4 1250 1287 IPR001680 GO:0005515
Lele01g1185 1635 SMART WD40_4 1207 1245 IPR001680 GO:0005515
Lele01g1185 1635 SMART Ubox_2 527 591 IPR003613 GO:0004842|GO:0016567
Lele01g1185 1635 MobiDBLite consensus disorder prediction 378 423 - -
Lele01g1185 1635 MobiDBLite consensus disorder prediction 320 349 - -
Lele01g1185 1635 ProSiteProfiles Trp-Asp (WD) repeats profile. 1257 1289 IPR001680 GO:0005515
Lele01g1185 1635 ProSiteProfiles U-box domain profile. 523 598 IPR003613 GO:0004842|GO:0016567
Lele01g1185 1635 Gene3D - 1195 1495 IPR015943 GO:0005515
Lele01g1185 1635 Pfam U-box domain 525 595 IPR003613 GO:0004842|GO:0016567
Lele01g1185 1635 Gene3D - 652 1055 IPR011989 -
Lele01g1185 1635 SUPERFAMILY RING/U-box 521 596 - -
Lele01g1185 1635 MobiDBLite consensus disorder prediction 437 464 - -
Lele01g1185 1635 MobiDBLite consensus disorder prediction 329 343 - -
Lele01g1185 1635 Pfam WD domain, G-beta repeat 1466 1493 IPR001680 GO:0005515
Lele01g1185 1635 Pfam WD domain, G-beta repeat 1257 1286 IPR001680 GO:0005515
Lele01g1185 1635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 508 606 IPR013083 -
Lele01g1185 1635 MobiDBLite consensus disorder prediction 437 456 - -
Lele01g1185 1635 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1494 - -
Lele01g1185 1635 SUPERFAMILY ARM repeat 584 1170 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1185 Lele-ChrLele01 7060714 7071187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1185 506 919 U-box Gene Family AT1G23030 24.764 3.17e-20 95.1