Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1178 ATGGAAGAAGTGGAGCTTGCTTCTCATCATTTGCATTCACAACAAAACCAACAAGAATCTTCTAAAGCAAGCAAACCTGAGAGTAGTGTTTCATTCTTTGGCTTGTTTTCTGCTGCTGATACATTTGACTATTTCTTGATGTTCCTGGGAAGTGTTGGTGCGTTTGTTCATGGCGCTGCTCTTCCTGTATTCTTCATCCTGTTCGGTCGTATGATTGATTCTTTAGGACATCTTTCTAAGCATCCTCATAAGTTGTCGTCACGCATTTCTGAGAATGCATTGTACTTGGTCTATCTTGGACTGGTTGTTCTGGCATCAGCTTGGATGGGGGTTGCATTTTGGACGCAAACAGGGGAAAGGCAAACAGCTCGTTTGCGTTTTAAGTATCTACAATCAGTTCTAAAAAAGGATATTATTTTCTTTGACAATGAAGCAAGAGACGCTAATATCATTTTCCACATTTCAAGTGACGCAATATTGGTACAAGATGCAATCGGTGACAAGACAGGCCATGCTATACGTTACCTTTCACAATTCATTGTTGGATTTGCCATTGGATTTGCGTCAGTATGGAAGCTCACACTGCTCACATTGGCTGTAGTTCCATTAATAGCCGTAGCCGGGGGAGCTTATACTATAACCATGTCTACCTTGTCAGAAAAAGGTGAAGCAGCTTACGCTGAAGCCGGGAAAGTGGCAGAAGAGGTAATTTCTCAAGTTCGTACGGTTTACTCATTTGTGGGAGAAGATAAAGCAGTGGCTTCATACTCCAAATCACTTGATAATGGGCTAAACCTAGGAAAGAAGAGTGGTTTTGCAAAAGGGGTTGGGGTAGGCTTAACATATGGACTGTTGTTCTGTGCTTGGGCATTGCTTCTTTGGTACGCAAGCATACTTGTGAGGCACCATAAAACAAATGGAGGCAAAGCATTCACAACTATCATTAATGTCATCTTTAGTGGATTTGCTCTGGGCCAGGCTGCGCCTAACCTCGCTGCCATTGCCAAAGGGCGTGCAGCTGCAGCGAATATCATGAACATGATTGCATCAGTTTCAAACACGTCTAAAAGTTTGGACACTGGGATTGTTTTGCCACAAGTGGTAGGGAAAATTGAATTTCAAGAGGTCTGCTTTTCTTACCCCTCAAGATCAAACTTGGTCTTTGAAAATTTGACCTTCACAGTAACTTCTGGGAAGACTATCGCAGTTGTTGGTCCTAGTGGTTCAGGAAAGAGCACTATCATTTCTATGCTTCAAAGATTTTATGATCCTACCTCAGGTAAGATACTATTGGATGGACAAGACCTAAAGAGTCTTGAATTGAAATGGTGGAGGAAACAAATGGGCTTGGTTAGTCAAGAACCATCTCTATTTGCCACAACAATATCTGAAAATATTTTACTTGGAAAAGAAGATGCAAACATGGATCAAATCTTACAAGCAGCCAAAGCTGCAAATGCTCATTCTTTTATTGAAGGCTTACCTGATGGTTATCTGACTCCGGTTGGAGAAGGTGGTACACAGCTTTCAGGAGGGCAGAAACAAAGAATAGCAATAGCAAGAGCAGTGCTCAGAAACCCAAAAGTGTTACTTCTAGATGAGGCCACTAGTGCTCTTGATTCAGAATCTGAGTTAATAGTTCAGCAGGCACTGGAAAAACTATTGTCAAATCGGACTACAATTATTGTTGCACACCGATTATCCACTATTCGCGATGTTGATACGATCGTGGTGTTGAAGAATGGTCAGGTTGTAGAAAGTGGTACTCATTCAGAATTGATGTCAAAAAATGGGGACTATGTGCATTTAGTGAGTTTGCAAGCATCAAACAACCCCATGACAGATTCTAATGCAATATCTCGATCAGGAAGTTCAAGACATTCGAGTTTTCGCCAAACTTTAGATAACCAAAAGTACCCTGATGAATTGAAGTCCATTTCAACAATAGAACCACATGAACCTTGTGATCAAAAGTCAATTCCTTCAATCGTAGAATTGCTTAAACTAAATGCCCCAGAATGGCCTTATGCAGTACTTGGATCAGTTGGCGCAATTATGGCAGGCATGGAAGCTCCTCTTTTTGCTCTTGGTATCACACATATTTTGACTGCATTTTACTCTCAACATGGTTATAAAATCAAGCAAGAGGTTGATAGGGTAGCTCTTATATTTGTTGGAGTTGCTGCTGTTACTATACCTATTTATCTACTGCAACATTACTTTTATACTTTGATGGGAGAGCGTCTCACAGCCCGTGTACGCTTATCAATGTTTTCAGCTATCCTGAACAACGAAATTGCATGGTTCGACTTGGATGAGAACAACACAGGATCATTAACAGCTAAGCTAGCTGCAGATGCAACATTAGTAAGAAGTGCTTTGGCTGACAGGCTCTCAACCATTGTACAAAATGTAGCTCTCACTGTAACAGCATTTGCTATTGCCTTTACACTGAGTTGGAAACTAACAGCAGTGGTTGTAGCATGCTTGCCACTTCTTATTGGGGCTTCAATCACTGAACAACTATTTCTCAAGGGATTTGGTGGAGATTATAGTGCAGCCTACTCTAGAGCAACTTCTTTGGCACGTGAAGCTATCTCAAATATACGAACTGTTGCCGCTTTTGGAGCAGAAGATCGAATCTCGTTCCAATTTGCCTCTGAATTGAACAAACCTAACAAGCAAGCACTTTTACGAGGCCACATCTCAGGTTTTGGTTATGGTGTCACACAGTTATTTGCTTTCTGTTCTTATGCACTTGGTCTCTGGTATGCATCAATCTTGATCAAGCACAAAGAATCTCACTTTGGTGACATTATGAAGTCTTTCATGGTTTTAATCATCACAGCTCTGGCAATAGCAGAAACACTAGCTCTTACACCAGACATTGTCAAAGGATCACAAGTTCTGGGGTCAGTTTTTGGGATTCTCCGAAGAAGAACATCAATCCCTCCGAATGAACCTAACTCGAAGGTGGTGACTGATGTGAAAGGAGAGATAGAGTTCAAAAATGTAAACTTTAGCTACCCAATGAGACCAGAAATCACCATTTTTGACAACTTGAACCTTAAAGTTAGAGCAGGGAAGAGTCTTGCAGTAGTTGGGCAGAGTGGTTCTGGGAAGAGCACTGTGATCTCACTGGTAATGAGATTCTATGACCCAACTTATGGAAAGGTTTTCATAGATGGATGTGATATCAAAACCCTAAACTTGAGATCCTTAAGACTGAGAATAGGTCTGGTTCAACAAGAACCTGCATTATTCTCCACCACAATATATGAAAACATCAAGTATGGCAAAGAAGAAGCCTCACAAATTGAGATAATGAAAGCAGCAAAAGCAGCAAATGCTCATGAATTCATCGTCAGAATGCCTGAAGGATATCAAACAGAGGTAGGTGAAAAAGGAGTACAATTATCAGGAGGCCAGAAACAGAGAATTGCAATCGCTAGAGCTATTTTGAAAGACCCATCGATTCTCTTATTAGATGAAGCAACAAGTGCATTGGACACAGTTTCAGAGAGATTGGTTCAAGAAGCTTTGGAGAAGCTTATGGAAGGACGAACGACAATTTTGATAGCTCACAGGTTATTAACAGTTCGAAATGCACACAACATTGCTGTGTTACAAAATGGGAAAGTGGCTGAAATTGGCAGCCATGAGAGGCTAATTGCTCAACCTGAAAGCATTTATAAGCAGCTGGTTAGTCTACAACAAGATAATAGTAGTGGCCAACTCATGAATTGA 3747 0.4097 MEEVELASHHLHSQQNQQESSKASKPESSVSFFGLFSAADTFDYFLMFLGSVGAFVHGAALPVFFILFGRMIDSLGHLSKHPHKLSSRISENALYLVYLGLVVLASAWMGVAFWTQTGERQTARLRFKYLQSVLKKDIIFFDNEARDANIIFHISSDAILVQDAIGDKTGHAIRYLSQFIVGFAIGFASVWKLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEDKAVASYSKSLDNGLNLGKKSGFAKGVGVGLTYGLLFCAWALLLWYASILVRHHKTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGRAAAANIMNMIASVSNTSKSLDTGIVLPQVVGKIEFQEVCFSYPSRSNLVFENLTFTVTSGKTIAVVGPSGSGKSTIISMLQRFYDPTSGKILLDGQDLKSLELKWWRKQMGLVSQEPSLFATTISENILLGKEDANMDQILQAAKAANAHSFIEGLPDGYLTPVGEGGTQLSGGQKQRIAIARAVLRNPKVLLLDEATSALDSESELIVQQALEKLLSNRTTIIVAHRLSTIRDVDTIVVLKNGQVVESGTHSELMSKNGDYVHLVSLQASNNPMTDSNAISRSGSSRHSSFRQTLDNQKYPDELKSISTIEPHEPCDQKSIPSIVELLKLNAPEWPYAVLGSVGAIMAGMEAPLFALGITHILTAFYSQHGYKIKQEVDRVALIFVGVAAVTIPIYLLQHYFYTLMGERLTARVRLSMFSAILNNEIAWFDLDENNTGSLTAKLAADATLVRSALADRLSTIVQNVALTVTAFAIAFTLSWKLTAVVVACLPLLIGASITEQLFLKGFGGDYSAAYSRATSLAREAISNIRTVAAFGAEDRISFQFASELNKPNKQALLRGHISGFGYGVTQLFAFCSYALGLWYASILIKHKESHFGDIMKSFMVLIITALAIAETLALTPDIVKGSQVLGSVFGILRRRTSIPPNEPNSKVVTDVKGEIEFKNVNFSYPMRPEITIFDNLNLKVRAGKSLAVVGQSGSGKSTVISLVMRFYDPTYGKVFIDGCDIKTLNLRSLRLRIGLVQQEPALFSTTIYENIKYGKEEASQIEIMKAAKAANAHEFIVRMPEGYQTEVGEKGVQLSGGQKQRIAIARAILKDPSILLLDEATSALDTVSERLVQEALEKLMEGRTTILIAHRLLTVRNAHNIAVLQNGKVAEIGSHERLIAQPESIYKQLVSLQQDNSSGQLMN 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1178 1248 CDD ABC_6TM_Pgp_ABCB1_D2_like 667 983 - -
Lele01g1178 1248 CDD ABC_MTABC3_MDL1_MDL2 1000 1238 - -
Lele01g1178 1248 FunFam ABC transporter B family member 4 990 1243 - -
Lele01g1178 1248 FunFam ABC transporter B family member 4 361 614 - -
Lele01g1178 1248 SUPERFAMILY ABC transporter transmembrane region 35 344 IPR036640 GO:0005524|GO:0016020
Lele01g1178 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 678 965 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele01g1178 1248 Gene3D - 361 608 IPR027417 -
Lele01g1178 1248 Pfam ABC transporter transmembrane region 48 320 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele01g1178 1248 Pfam ABC transporter transmembrane region 682 951 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele01g1178 1248 Gene3D ABC transporter type 1, transmembrane domain 34 967 IPR036640 GO:0005524|GO:0016020
Lele01g1178 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 989 1238 IPR027417 -
Lele01g1178 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1000 1236 IPR003439 GO:0005524
Lele01g1178 1248 PANTHER ABC TRANSPORTER B FAMILY 13 731 - -
Lele01g1178 1248 SMART AAA_5 397 583 IPR003593 -
Lele01g1178 1248 SMART AAA_5 1027 1213 IPR003593 -
Lele01g1178 1248 CDD ABC_MTABC3_MDL1_MDL2 371 607 - -
Lele01g1178 1248 ProSitePatterns ABC transporters family signature. 509 523 IPR017871 GO:0005524|GO:0016887
Lele01g1178 1248 Pfam ABC transporter 1019 1167 IPR003439 GO:0005524
Lele01g1178 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 607 IPR027417 -
Lele01g1178 1248 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 331 - -
Lele01g1178 1248 Gene3D - 990 1246 IPR027417 -
Lele01g1178 1248 Pfam ABC transporter 389 537 IPR003439 GO:0005524
Lele01g1178 1248 SUPERFAMILY ABC transporter transmembrane region 666 978 IPR036640 GO:0005524|GO:0016020
Lele01g1178 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 336 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele01g1178 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 371 606 IPR003439 GO:0005524
Lele01g1178 1248 ProSitePatterns ABC transporters family signature. 1139 1153 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1178 Lele-ChrLele01 7012227 7017740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1178 30 1239 Calmodulin-binding Proteins AT2G36910 50.121 0.0 1223