Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1175 ATGCAACACGGGGACTACAGCTCATCTCCTTATTATCAATTCCCTCCGATGCCGAACCCAATTCCCAAACCTAACTCTAACCCTAACCCTATCCCTCCCGATTCAGTCCCAAGCCAGTACGCCTCCGCTCCGCCTTTCACCTCGGATTATTCGCCTTACGCTTCTACCTATCCTCCATACCCTCAAAATCCGGATCCTATGCCAGTCCCTCCCACTGCCCCTTCATACCCTCCAACCTCCAACCCCAATTTAAACTCTTTCAGTTCTCCTCCCCAACCTTCCTCTTTTCCTCCGTTTGAGTCGCATGTCCCGTATCAACAACCTCCACAACAATGCCAATATCCACCGTATGATCAACATCAGACGGCTCTAAGTTATGCCCCTTCTTCCTCCGCAATTCCTCCAAACCCCACTCCCAATTCTGTAACATCGTCCTTCTATCCGGCTTCTTACACTCATCCTGGATCGTCGATTCCTCCTACATACGAAAGTCCGTACGAGAATTCCATGAAATTCGATTATGGTGGTGCTAATGTCGATGACAAGTATGGAAGTTTCAATCGGAGTCGGCCTGATATGGGGTCGGATTTGTATGGAAAGCGACAGGATACGAGGCATGATGACATTTATGGAGATGGTGTGTGTGCCTATAGAGGGGGCGAGACGGAACCATATGGAGCACGGGGTACGGCTCCTAAGTCTTCAACTTGGTCCGGTTTTGATGATTATGGAAGGTCGATTAGTTTTCCCTCTGCGAAGGAACCCTCTTTTTCTAACAAGGTTGTGAAAGCTGTGCCGAAGTCTGATGCCCAAGAGGATGTTAAAAGCGGAGTGCAAAAATTTCGTGTCAAGCTATTGGCAGAAAGTGTTGGTCAGGGCACTACGGATGTTCTTTGTCAGAAATTCGATTCCAATACCCTTGCGTTTTGGTCTAAGAGTCCAGTTGACATTGAGCCAAGACGAATCAGACTGCAATCCAATAGTTACACCACTAACACTCTCTTGGATACAGTTACTGCTGCAACCATACAGTTCAAGGAAATGGGTGAAAGTAGGAGGCCTGTTGAATCATTGAAAACAAATGAGCAACCTACAGAAAAGAAGAAAGGCCTTGTTGATTGGATGAATCTGATCAAACCTGCCAATGAGGAGAAAGATCATTGGGTCCCAGATGAAGCAGTTTCAAAATGCACAGCATGTGGGACTGATTTTGGGGCTTTTGTTCGTAAGCATCACTGTAGGAATTGTGGGGATATTTTCTGTGACAAATGCACACATGGTAGAATTGCTCTAACTGCTGATGAGAATGCTCAGCCAGTACGAGTTTGTGACCGATGCGTGGCAGTAGTGACACAGAGGCTCAGTAATGCTAAAGAGGCTCCAAACAAGCCTGTATTGCAAAGTCATGAGGATCTTGCGAGGAAACTTCAGGAGGAGCTGGAGAGGAATCGGAGGGTGTCAGGTTCCAGTTCTGATGGATCTGGGAGACGGATGAAGGAAGTTGAATGCCCCACTTGCACAGTCCATCTGCAGGTTCAAGTACCCAGCTCAGGTTCAGAGACCATTGAGTGTGGGGTTTGCCAGCACCCATTTCTTGTGAGTGCTCATTGA 1611 0.4749 MQHGDYSSSPYYQFPPMPNPIPKPNSNPNPIPPDSVPSQYASAPPFTSDYSPYASTYPPYPQNPDPMPVPPTAPSYPPTSNPNLNSFSSPPQPSSFPPFESHVPYQQPPQQCQYPPYDQHQTALSYAPSSSAIPPNPTPNSVTSSFYPASYTHPGSSIPPTYESPYENSMKFDYGGANVDDKYGSFNRSRPDMGSDLYGKRQDTRHDDIYGDGVCAYRGGETEPYGARGTAPKSSTWSGFDDYGRSISFPSAKEPSFSNKVVKAVPKSDAQEDVKSGVQKFRVKLLAESVGQGTTDVLCQKFDSNTLAFWSKSPVDIEPRRIRLQSNSYTTNTLLDTVTAATIQFKEMGESRRPVESLKTNEQPTEKKKGLVDWMNLIKPANEEKDHWVPDEAVSKCTACGTDFGAFVRKHHCRNCGDIFCDKCTHGRIALTADENAQPVRVCDRCVAVVTQRLSNAKEAPNKPVLQSHEDLARKLQEELERNRRVSGSSSDGSGRRMKEVECPTCTVHLQVQVPSSGSETIECGVCQHPFLVSAH 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1175 536 MobiDBLite consensus disorder prediction 479 498 - -
Lele01g1175 536 PANTHER PROTEIN FREE1 299 536 IPR045893 GO:0036258|GO:0043130
Lele01g1175 536 PRINTS Proline rich extensin signature 93 109 - -
Lele01g1175 536 PRINTS Proline rich extensin signature 128 153 - -
Lele01g1175 536 PRINTS Proline rich extensin signature 52 64 - -
Lele01g1175 536 PRINTS Proline rich extensin signature 30 46 - -
Lele01g1175 536 PRINTS Proline rich extensin signature 66 87 - -
Lele01g1175 536 PRINTS Proline rich extensin signature 14 26 - -
Lele01g1175 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 455 IPR013083 -
Lele01g1175 536 Pfam FYVE zinc finger 387 451 IPR000306 GO:0046872
Lele01g1175 536 MobiDBLite consensus disorder prediction 57 78 - -
Lele01g1175 536 MobiDBLite consensus disorder prediction 13 39 - -
Lele01g1175 536 MobiDBLite consensus disorder prediction 40 56 - -
Lele01g1175 536 MobiDBLite consensus disorder prediction 185 205 - -
Lele01g1175 536 MobiDBLite consensus disorder prediction 105 145 - -
Lele01g1175 536 SMART fyve_4 383 452 IPR000306 GO:0046872
Lele01g1175 536 Coils Coil 466 486 - -
Lele01g1175 536 MobiDBLite consensus disorder prediction 1 145 - -
Lele01g1175 536 SUPERFAMILY FYVE/PHD zinc finger 386 456 IPR011011 -
Lele01g1175 536 FunFam Zinc finger, FYVE-type, endofin 378 456 - -
Lele01g1175 536 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 391 451 IPR017455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1175 Lele-ChrLele01 6999030 7003466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1175 379 446 EF-hand Containing Proteins AT3G14270 37.838 5.32e-12 67.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1175 01 6999030 7003466 Lele25g0050 25 306720 309991 CCT
Lele01g1175 01 6999030 7003466 Lele26g0061 26 335090 338293 CCT
Lele01g1175 01 6999030 7003466 Lele27g2036 27 24403034 24406313 CCT
Lele01g1175 01 6999030 7003466 Lele28g0060 28 332220 336525 CCT
Lele01g1175 01 6999030 7003466 Lele01g1175 01 6999030 7003466 ECH
Lele01g1175 01 6999030 7003466 Lele03g1190 03 6973599 6978072 hybridization
Lele01g1175 01 6999030 7003466 Lele04g1424 04 19551137 19554556 hybridization