Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1164 ATGGCAGGGTGATGTCTTAGTTCTGGCAAGGGGCAACACGTGGCCTGTGAACGATCAACGGATCAGATCTTCCATATGAAGGATATCTCATGGAAATTTGCCTTTTTGGGTTCTAGCTTGTGCAAGTTTCATCGCCCGAAGGAGTCCCCAAGCCTCTCCCGTGTTGATCGAACCAGGTCCCACCCGATTTCTGTGCAAAATGCAGATGTATCAGGAAGCTTCTTTGAGGATATTGCTGATGAGGATGAAGATGAAGATCTCTCGTTCTTTCGGAAGCCTCCACCCACGGGAACATTTCTGAGGGACCCAGCTTCGGTCCAGTACCTTCTACAAGTCTTGCAGAGTGGCAGGGGACGATTTCGTAGATGTTTTTTCAAAATGACTCAAGATGTTGAGATGAAAGATCACACAACTCCTTCGCATTCTGTTTTCTTGCAGCATTTAAAGGAGATAGCGTCATTTATCGAGACCGGTTCGTACTCTAAGGAAGTTCGTAGAATAGCTCGTGCCGTTCGCCTTACAATTGCGTTGAGGGGCAAATTGACAGCATCGGTGCTCTTATCCTTTATCGATTATGTTGCTTGTCCGGGTTCTGAACCTCACGCCAGATTGTCTGCCTATCTTCCCGAGGAAGATAGTCATGAGATGGAAGTAGATACTGCAACATCTACTGTTCAATCCTCAGCTAAGCACTTATTGCCTGAGATGGAGATGTACTGTTACTTGCTCATACTTCTTTTTCTGATTGATCAGAAGAAATATAAGGAAGCCAAAGCTTGCTCCTCAGAAAGCATTGTCCGGGTGAAGAGCCTAAACAGAAGAACTATTGATCTTATTGCATCCAGATTGTACTTCTATTATTCATATATTTATGAACTCACTGGAGATCTTGCGGAAATTCGGGGTAACCTTCTTGCTTTGCACCGGATTGCCACCCTTCGTCATGATGAGCTTGGTCAGGAAACACTTCTTAATTTGTTGCTTCGTAACTACCTCCACTACAACCTATATGATCATGCAGAGAGGTTGAGATCTAAGGCACCACGATTTGAAGCACATTCAAACCAGCAGTTCTGTCGATATCTCTTCTACCTCGGGAAAATTCGGACAATTCAATTGGAGTACACTGATGCAAAAGAGTCTCTCCTGCAAGCTGCTCGAAAAGCTCCGGTTGCAGCACTTGGTTTTCAAATTCAGTGTAATAAGTGGGCTGTAATAGTGCGTTTGCTCTTGGGAGAAATACCTGAGAGGACCGTCTTCATGCAGAAAGGAATGGAGAAAGCTTTGAGGCCTTACTTTGAGCTTACAAATGCTGTTCGAATTGGAGACCTGGAGCTATTTAGGAATGTTGCAGATAATTTTGCTGCTACTTTCAGTGCTGATGGAACTCATAATTTGATTATTAGATTGCGTCATAATGTCATCAGGACTGGTTTACGAAATGTTAGCATTTCTTATTCTCGTATCTCGCTTACTGATGTGGCACAGAAGTTAAGGTTAAACTCTGCAAACCCCATTGCAGATGCTGAGAGCATTGTAGCCAAGGCCATCAGAGATGGTGCGATTGATGCTATATTGGAGCATGGTAATGGGTGGATGGTATCTAAGGAATCTGGAGATGTATACTCCACTACGGAGCCTCAATTGGCTTTTAATTCTCGCATTGCCTTCTGTCTTAACATGCACAATGAGGCCATCCGGGCACTGCGTTTCCCTCCAAACACACACAATGAGAAGGAAAGCGCGGAGAGGCGGAGAGAAAGGCAGCAGCAGGAGCAAGAACTAGCTAAGCACATTCAAGAGGAGGAGGAGGAGGATTTCTGA 1824 0.4474 MAGXCLSSGKGQHVACERSTDQIFHMKDISWKFAFLGSSLCKFHRPKESPSLSRVDRTRSHPISVQNADVSGSFFEDIADEDEDEDLSFFRKPPPTGTFLRDPASVQYLLQVLQSGRGRFRRCFFKMTQDVEMKDHTTPSHSVFLQHLKEIASFIETGSYSKEVRRIARAVRLTIALRGKLTASVLLSFIDYVACPGSEPHARLSAYLPEEDSHEMEVDTATSTVQSSAKHLLPEMEMYCYLLILLFLIDQKKYKEAKACSSESIVRVKSLNRRTIDLIASRLYFYYSYIYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDHAERLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFQIQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNVADNFAATFSADGTHNLIIRLRHNVIRTGLRNVSISYSRISLTDVAQKLRLNSANPIADAESIVAKAIRDGAIDAILEHGNGWMVSKESGDVYSTTEPQLAFNSRIAFCLNMHNEAIRALRFPPNTHNEKESAERRRERQQQEQELAKHIQEEEEEDF 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1164 607 Coils Coil 579 605 - -
Lele01g1164 607 Pfam PCI domain 431 536 IPR000717 -
Lele01g1164 607 SUPERFAMILY "Winged helix" DNA-binding domain 469 542 IPR036390 -
Lele01g1164 607 Gene3D - 366 560 - -
Lele01g1164 607 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 138 598 - -
Lele01g1164 607 SMART PINT_4 465 558 IPR000717 -
Lele01g1164 607 ProSiteProfiles PCI domain profile. 359 540 IPR000717 -
Lele01g1164 607 Pfam Proteasome regulatory subunit C-terminal 540 606 IPR013586 GO:0000502|GO:0030234|GO:0042176
Lele01g1164 607 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 465 558 - -
Lele01g1164 607 MobiDBLite consensus disorder prediction 573 600 - -
Lele01g1164 607 MobiDBLite consensus disorder prediction 572 607 - -
Lele01g1164 607 FunFam 26S proteasome non-ATPase regulatory subunit 3 240 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1164 Lele-ChrLele01 6925685 6933670 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0050 25 306720 309991 Lele01g1164 01 6925685 6933670 CCT
Lele26g0061 26 335090 338293 Lele01g1164 01 6925685 6933670 CCT
Lele27g2036 27 24403034 24406313 Lele01g1164 01 6925685 6933670 CCT
Lele28g0060 28 332220 336525 Lele01g1164 01 6925685 6933670 CCT
Lele01g1164 01 6925685 6933670 Lele01g1164 01 6925685 6933670 ECH
Lele01g1164 01 6925685 6933670 Lele03g1178 03 6899671 6906376 hybridization
Lele01g1164 01 6925685 6933670 Lele04g1412 04 19471437 19475527 hybridization