Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1112 ATGACTAGGAAGAAGGTGAAGCTCGCGTTCATTGCGAATGATTCCGCGAGAAAAGCCACTTACAAGAAAAGAAAGAAGGGTTTGATCAAGAAGATCGACGAACTCACCACTCTCTGCGGAATCGAGGCCTGTGCGATCATTTACAGCCCGTACGATTCTCAGCCGGAGGTTTGGCCGTCGCCGTTCGGAGTTCAACGTGTTCTGTCGAAGTTCAGGAGGATGCCGGAGCTGGAGCAGAGCAAGAAGATGGTGAACCAGGAAGGGTTTCTGAAGCAGAGGATTCTGAAAGCGAAGGAGCAGTTGAAGAAGCAGAGGAAGGACAATAGAGAGAAGGAGATGAGTCAGATCATGTATCAGTATCTGAGTGCAGGGAAGGTTCTGCATAACATGACGATGCTCGATCTAAACGATTTGGTGTGGCTCGTCGAGCAGAATCTGAAGGACGTGAACCGGAGGATCGAGACGCTGGACAAGAGGGCTCAGAGTCAGAGGGCCGCTGATGTGGCGGCCATGGCCGCGGCTGATGCGGCTGCGAGGAGTCGAGAAAAGGCGAAGGCGGAGCAGGTGGATGCTAATGGGATGGAGGTGGCCGGAGGCGGCGGGGACGCCTTGCCGAAGCAGCAGTGGTATATGGACATGATGAATGGTGGGGCGGATGAAACGCTGCAGTTTGGAGATGTGAGTCACTCCAATGTGTTTTGGCACAATCACTATTTCCCTTGA 723 0.5325 MTRKKVKLAFIANDSARKATYKKRKKGLIKKIDELTTLCGIEACAIIYSPYDSQPEVWPSPFGVQRVLSKFRRMPELEQSKKMVNQEGFLKQRILKAKEQLKKQRKDNREKEMSQIMYQYLSAGKVLHNMTMLDLNDLVWLVEQNLKDVNRRIETLDKRAQSQRAADVAAMAAADAAARSREKAKAEQVDANGMEVAGGGGDALPKQQWYMDMMNGGADETLQFGDVSHSNVFWHNHYFP 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1112 240 Coils Coil 91 114 - -
Lele01g1112 240 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lele01g1112 240 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Lele01g1112 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele01g1112 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lele01g1112 240 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lele01g1112 240 Coils Coil 146 166 - -
Lele01g1112 240 PANTHER MADS BOX PROTEIN 3 149 - -
Lele01g1112 240 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lele01g1112 240 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Lele01g1112 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele01g1112 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele01g1112 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1112 Lele-ChrLele01 6534404 6535126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1112 1 176 Type I MADS-box Gene Family AT5G48670 61.364 9.50e-69 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele01g1112 SRF-TF 1.1e-16 No_clan