LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele01g1094	ATGTCACCTGTTTCACTGCCTCCTGGCTTCAGGTTCCACCCTACAGATGAAGAGCTGGTTGCTTATTATCTCAAAAGAAAGATCAACGGCCACGAGATTGAGTTAGAGATCATCCCCGAAGTTGATCTTTACAAGTGCGAGCCCTGGGACTTGCCTGCTGCTTCTTCTGGCATTCAGGATGCTTATGCACTCTGTCGTGTGATCAAGAAGACTGCAGTTATAACTATGAAAATCACAGATCATTACGTGAATGGAAATCAGATTATGAATACGAGTGATCAGTCATCGAGCATGGAACTCTACTCTGAAGGAAGATCAGGAGAAGATTTAGATCAGAGCTCAGATTATTTGATGCCTATGGATCCTAATAGCTCACCCCATAATATTGGAAATCCCCTTTCAGGACCAAGAGATAACCATGGCAAATGGTCAGAGACTCAGTTCTTATCTGAAAATCCATTCTCTCTTCCAAATTCTTCTTCATTATTTTCCAACTGTGGTTCCATACCTTACCCTCCATCCAAGGTGGATATTGCACTAGAATGTGCCAGGATGCAGCATAGGTTTGCTCCAATGGAGGACTTTCCTTCTGAACTGAAGATGCAAGCACAATATGGTGGTGGGGCCAAAAATGAAGCTGATGAGTTATTACAGGAGATTCTTTCAGTTGCTCATGCTTCTCAGCAACTCATAAACCAGTCTTCTAATAACTATTCTTCTCACTCATGGGGTGGTACTACTAGTACTGCAAACCACCAGCATTATGCTCCTTCTGAACAAGAACATGATTTCACTTTTATGGTTGGCAGAGATAGCACTAATGCTAATGATTATAACTATTATAATAGCAATGCCTGCTGGGAAGATCCAGTAAACACTTCAAGGTCGATAGAGATTGGAGATCTGGATGGTAATTTCAAAGCAGAGAGGATCGTTGAGAATTTAAGATGGGTTGGCATATCAAGCAAGGATTTGGAAATTAAGAGCTATATGGAAGATCAGAAAATTGTCCCAACGGAGGATATTTCTAGTTTCCGAGCAAACAGGGAGGGGAATGAACTGCTGCAAGCAGAATGTGATAATCAGCAAGAAAATAGCAGCAAGGAACTGAATGACACAGACATAAACGACATCTCATTAGGGTTCATCAACGAGGATGACACTAATGAGAACTTGATAGATGAACAGGGCGATGATTATTCGAGTTCTCCGAGTTTTGAGGTGGTTGAAGAAGTCAAAGTGATCAGCCATGGAATGTTTGTGTCCACAAGACAAGTAGCTGACACATTCTTTCACCAAATAGTTCCTTCACAAACCTTCAAGGTTCAACTGAACCCAGTGATAATGGCGCACAATTATCACACGTCGGTGGAGAACATAGAAACGTCAGTTTCTTTCTTCAGAAACTTGAAGGCCTATTCTGATGAGAGAAGTTGGAGTTATGGTGCTGATAATAATTGCGACAATAAGAGCATGAAGAGAATGAGAGAATATGAAGATGATGATGAGAAGGAAAAAGTTTGATATGAGGAGGAGGAGGAGGAGGAGGAGGAAGTCGACGGCTATCTAGGACGGCGAGATGCAGAGAAGCTCGAGTACTCAGGCACAAACGGCGACGGAAGGCGAGATAAAGGGAGGAGAGAACGAAGGGGCGACGAAGGGCAAGATGAAGAAGGTAGAGAAAGAGGAGGGCTACTGGAGTTGGAGGCAGCTGTGGCAGACTAG	1725	0.4307	MSPVSLPPGFRFHPTDEELVAYYLKRKINGHEIELEIIPEVDLYKCEPWDLPAASSGIQDAYALCRVIKKTAVITMKITDHYVNGNQIMNTSDQSSSMELYSEGRSGEDLDQSSDYLMPMDPNSSPHNIGNPLSGPRDNHGKWSETQFLSENPFSLPNSSSLFSNCGSIPYPPSKVDIALECARMQHRFAPMEDFPSELKMQAQYGGGAKNEADELLQEILSVAHASQQLINQSSNNYSSHSWGGTTSTANHQHYAPSEQEHDFTFMVGRDSTNANDYNYYNSNACWEDPVNTSRSIEIGDLDGNFKAERIVENLRWVGISSKDLEIKSYMEDQKIVPTEDISSFRANREGNELLQAECDNQQENSSKELNDTDINDISLGFINEDDTNENLIDEQGDDYSSSPSFEVVEEVKVISHGMFVSTRQVADTFFHQIVPSQTFKVQLNPVIMAHNYHTSVENIETSVSFFRNLKAYSDERSWSYGADNNCDNKSMKRMREYEDDDEKEKVXYEEEEEEEEEVDGYLGRRDAEKLEYSGTNGDGRRDKGRRERRGDEGQDEEGRERGGLLELEAAVAD	574

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele01g1094	574	MobiDBLite	consensus disorder prediction	235	255	-	-
	Lele01g1094	574	Coils	Coil	509	519	-	-
	Lele01g1094	574	Coils	Coil	495	507	-	-
	Lele01g1094	574	Gene3D	NAC domain	15	91	IPR036093	GO:0003677\|GO:0006355
	Lele01g1094	574	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	5	66	-	-
	Lele01g1094	574	MobiDBLite	consensus disorder prediction	521	567	-	-
	Lele01g1094	574	MobiDBLite	consensus disorder prediction	504	520	-	-
	Lele01g1094	574	MobiDBLite	consensus disorder prediction	489	503	-	-
	Lele01g1094	574	MobiDBLite	consensus disorder prediction	103	144	-	-
	Lele01g1094	574	MobiDBLite	consensus disorder prediction	117	132	-	-
	Lele01g1094	574	SUPERFAMILY	NAC domain	4	58	IPR036093	GO:0003677\|GO:0006355
	Lele01g1094	574	ProSiteProfiles	NAC domain profile.	6	171	IPR003441	GO:0003677\|GO:0006355
	Lele01g1094	574	Pfam	No apical meristem (NAM) protein	7	69	IPR003441	GO:0003677\|GO:0006355
	Lele01g1094	574	MobiDBLite	consensus disorder prediction	481	574	-	-
	Lele01g1094	574	MobiDBLite	consensus disorder prediction	235	262	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele01g1094	Lele-ChrLele01	6411518	6416481	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele01g1094	1	55	NAC Transcription Factor Family	AT1G65910	85.455	1.22e-26	112

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Lele01g1094		NAM	7.9e-16	No_clan