Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1070 ATGGAGTCGGTTCTGAAGAAATACTTCGGGTTTTCCGAGTTCCGCCCGTATCAGAAGGATGTCATCGAGAAAGTATTAGAGAAAAGGGACTGCTTGGTAGTCATGGCCACTGGTAGTGGGAACTATCAGGTACCTCCATTGGTTGCTAGAAAGACTGGGATAGTTGTTAGCCCTCTCATTTCATTAATGCAAGACCAGGTAATGGCTTTGAAACAACGGGGTATCAGAGCTGAGTATCTTGGGAGCGCACAGACTGATCCCACTGTCCAGACTAAAGCTGAGTGTGGCCAATTTGACATTCTGTTCTTGACTCCCGAGAAGGCGTGCTTAATTCCTACCAGCTTCTGGTTGAACTTGCTGAAGGCAGGGATTTGTCTTTTTGCTGTTGACGAGGCACATTGTATATCAGAATGGGGCCATGATTTTAGGGTGGAATACAAGCAACTAGACAAGTTACGCGGTGTTCTATCTGATGTTCCTTTTGTTGGCCTAACTGCAACTGCTACCGAAAAGGTTCGAGTTGACATCGTCAGTTCCTTGAAGATGTGCAATCCTTATGTTTCAATCGGTTCATTTGATCGCACCAATCTTTTCTATGGTGTCAAGCCTTTTAACCCCGGACAACATTTTGTAAATGAGCTTGTGCAAGAGATTTCAAAAAAAGTAGCAAGTGGTGGTTCCACTATAATCTACTGCACTACAGTCAAAGATGTAGAACAGATTTCCAAGTCACTTTTGGAAGCAAGTGTTGCAGCTGGGAAGTATCACGGGCAAATGAGTAAAAAATCTCGTGAGGAATCTCATGGATCATTTGTTAGAGATGAACTGCAAGTCATGGTAGCAACTGTTGCTTTTGGTATGGGTATAGATAAGCCTGACATAAGACAGGTGATTCACTATGGCTGCCCTAAGAGCCTCGAGTCCTACTATCAGGAAAGTGGGCGATGTGGCCGAGATGGTGTAGCTTCTGTTTGTTGCCTTTACTACACAAGAAGTGACTTTGCAAAGGGCAGCTTTTATTGTGGAGAATTACAAACAGAAAAGCAAAAAAAAGCTGTCATGGAGTCATTAATGGCTGCTAAACGCTATTGCTTGCTGACAACTTGCAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAAAATGTTTCAGCTGATAGATGCGGAAATTGTGATAACTGCATTGTCTCAAAGAAGCAACGGGACATGTCAACAGAAGTATTTCTTCTACTGGCTTGCATTCAATCATGTAGGGGGAAATGGGGCCTGAACATGCCCATTGACATCCTGCGTGGGTCTCGAGCCAAAAAGATTCTTGATGCTCAGTTTGACAAGCTTCCTCTTCATGGTCTTGGCAAGGCTCACCCATCAAATTGGTGGAAAGCACTTGGACATCAATTAATTTCTCATGGTTATTTGAAGGAGACTGTTAGTGATGTGTACAGAACTGTGAGTGTCAGCTCAAAAGGAGAGCAATTTCTGGTCTCTTCTACACCGGATTATCAACCACCCTTAGTTCTGTCATTGACTGCTGAAATGCTTGATGAGGAGGAAAACAGATCTGCCCCAGAAGAATTCAAAAGTTTAGCCACTTCAGAGACTGAAGGTTTTTCAGAGGCTGAGGGGCAGCTCTACCAAATGCTTTTGGAAGAGAGAATGAAACTTGCAAGAAGTGTTGGAACAGCTCCATATGCCATTTGTGGCGATCAAACAATCAAGAAAATTGCACTGACAAGACCATCTACAAAAGCAAGGCTAGCAAACATTGATGGTGTGAATCAGCACCTGGTAACGAGATATGGAGATCATTTTCTTCAAGCTATAAAACAATTGTCGCAAGGATTGAACCTTTCCCTGGATGGAGAAGCAAATCTGCAACTGCAAGCTCCTGCAGTAAGGAAATTGTCCACTGCAAGTCTAACCAATGAATCAAAGAAGTTGACGCCAGCAAAGTTTGAGGCCTGGAAAATGTGGCATGAAGATGGTCTTTCTATTCAGATGATTGCTAACTTTCCAGGTAGATCAGCTCCTATAAAAGAACAGACTGTTGTGGAATATCTGCTGGAAGCCTCCCGAGAAGGATTACCTTTTGATTGGACTAGATTCTGTGAGATGGTTGGACTGACACCTGAAATCATCTCGGAAATTCAGGGTGCTATTCTAAAAGTTGGATCTACAGAAAAATTGAAGCCTATAAAAAATGAGTTACCAGAAGAGGTAAGCTATGTGCACATCAAGACTTATTTGGCAATGCAAAACTCTGGAATATCTATTGAAGGCACTCAGGAAGAGATCAGCCAGGCAGAGAAAGATGCTGAACTCGCGAAGGTGACATCGGATTTACTGCAGAATCCATTCTATACATGCAACATGGAAATAAGTGGGGAAATTGACATGTCTCCTAAGAGTCCGATGAAAAAATGTGACCTAGATAAGGATGAGGAATCGAATGGACGTACCAAGGGTTGCCAGGTACAGAATCTTCCATTAGTCTGTGAGGAGGAGTTGACAAACAAACGCCAAAAAGTCAGTGAACCAAATGAAGAAAGTCATATCAAATTGAAGGCGACAGAGAGTTCCATAGTAGAGTGGCTGAAGAACCATGAAGGGGCTACATTGAATGATATTGTGAAGAATTTCAATGGATCCAGTGAAGATTCTGTGGTGGAACTACTGAATCGCCTTGAGGCTGAGTTTTTGATCTATAAGAAAAATAGCATGTACAGGCTTATGTGA 2733 0.427 MESVLKKYFGFSEFRPYQKDVIEKVLEKRDCLVVMATGSGNYQVPPLVARKTGIVVSPLISLMQDQVMALKQRGIRAEYLGSAQTDPTVQTKAECGQFDILFLTPEKACLIPTSFWLNLLKAGICLFAVDEAHCISEWGHDFRVEYKQLDKLRGVLSDVPFVGLTATATEKVRVDIVSSLKMCNPYVSIGSFDRTNLFYGVKPFNPGQHFVNELVQEISKKVASGGSTIIYCTTVKDVEQISKSLLEASVAAGKYHGQMSKKSREESHGSFVRDELQVMVATVAFGMGIDKPDIRQVIHYGCPKSLESYYQESGRCGRDGVASVCCLYYTRSDFAKGSFYCGELQTEKQKKAVMESLMAAKRYCLLTTCRRKFLLEYFGENVSADRCGNCDNCIVSKKQRDMSTEVFLLLACIQSCRGKWGLNMPIDILRGSRAKKILDAQFDKLPLHGLGKAHPSNWWKALGHQLISHGYLKETVSDVYRTVSVSSKGEQFLVSSTPDYQPPLVLSLTAEMLDEEENRSAPEEFKSLATSETEGFSEAEGQLYQMLLEERMKLARSVGTAPYAICGDQTIKKIALTRPSTKARLANIDGVNQHLVTRYGDHFLQAIKQLSQGLNLSLDGEANLQLQAPAVRKLSTASLTNESKKLTPAKFEAWKMWHEDGLSIQMIANFPGRSAPIKEQTVVEYLLEASREGLPFDWTRFCEMVGLTPEIISEIQGAILKVGSTEKLKPIKNELPEEVSYVHIKTYLAMQNSGISIEGTQEEISQAEKDAELAKVTSDLLQNPFYTCNMEISGEIDMSPKSPMKKCDLDKDEESNGRTKGCQVQNLPLVCEEELTNKRQKVSEPNEESHIKLKATESSIVEWLKNHEGATLNDIVKNFNGSSEDSVVELLNRLEAEFLIYKKNSMYRLM 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1070 910 MobiDBLite consensus disorder prediction 801 818 - -
Lele01g1070 910 Gene3D HRDC domain 533 613 IPR044876 -
Lele01g1070 910 Gene3D - 1 192 IPR027417 -
Lele01g1070 910 SMART hrdc7 537 617 IPR002121 GO:0003676
Lele01g1070 910 Gene3D - 194 396 IPR027417 -
Lele01g1070 910 FunFam ATP-dependent DNA helicase 396 520 - -
Lele01g1070 910 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 210 364 IPR001650 -
Lele01g1070 910 SMART RQC_2 401 505 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lele01g1070 910 Pfam Helix-turn-helix domain 652 748 IPR029491 -
Lele01g1070 910 FunFam ATP-dependent DNA helicase 194 395 - -
Lele01g1070 910 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 3 453 IPR004589 GO:0004386|GO:0006310
Lele01g1070 910 Pfam RecQ zinc-binding 333 393 IPR032284 -
Lele01g1070 910 MobiDBLite consensus disorder prediction 797 819 - -
Lele01g1070 910 Pfam DEAD/DEAH box helicase 16 172 IPR011545 GO:0003676|GO:0005524
Lele01g1070 910 FunFam ATP-dependent DNA helicase 533 623 - -
Lele01g1070 910 SMART helicmild6 239 320 IPR001650 -
Lele01g1070 910 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 186 IPR014001 -
Lele01g1070 910 Pfam RQC domain 397 493 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lele01g1070 910 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 334 IPR027417 -
Lele01g1070 910 CDD SF2_C_RecQ 194 329 - -
Lele01g1070 910 Gene3D - 397 521 IPR036388 -
Lele01g1070 910 Pfam Helicase conserved C-terminal domain 213 319 IPR001650 -
Lele01g1070 910 ProSiteProfiles HRDC domain profile. 537 617 IPR002121 GO:0003676
Lele01g1070 910 SUPERFAMILY "Winged helix" DNA-binding domain 392 498 IPR036390 -
Lele01g1070 910 SUPERFAMILY HRDC-like 536 612 IPR010997 GO:0000166|GO:0044237
Lele01g1070 910 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 684 - -
Lele01g1070 910 FunFam ATP-dependent DNA helicase 1 192 - -
Lele01g1070 910 Pfam HRDC domain 542 607 IPR002121 GO:0003676
Lele01g1070 910 SMART ultradead3 10 202 IPR014001 -
Lele01g1070 910 CDD DEXHc_RecQ 2 193 - -
Lele01g1070 910 Coils Coil 757 777 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1070 Lele-ChrLele01 6249734 6257645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1070 229 336 Eukaryotic Initiation Factors Gene Family AT3G19760 28.704 6.66e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1070 01 6249734 6257645 Lele25g1388 25 9937440 9939835 CCT
Lele01g1070 01 6249734 6257645 Lele26g1412 26 9907104 9909493 CCT
Lele01g1070 01 6249734 6257645 Lele27g0698 27 14980488 14982868 CCT
Lele01g1070 01 6249734 6257645 Lele28g1397 28 10092933 10095297 CCT
Lele01g1070 01 6249734 6257645 Lele01g1070 01 6249734 6257645 ECH
Lele01g1070 01 6249734 6257645 Lele03g1075 03 6244859 6253576 hybridization
Lele01g1070 01 6249734 6257645 Lele04g1084 04 6805296 6806591 hybridization