Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1054 ATGTCCCTGCACTCCGATCTCCATCTTCAACACCCAGAAACATGCACAACCACGACAAGAAGAAGAAACCATCAGAGGCTCCTCAGAATCATACTCGCTGATCACGACGCCACTGATTCTGACTCTGACTCTGACTCTGACTCTTCCTCTTCCTCCTATGGAAACCCGCAAAACTCCTCAAGAGTCAAGCGCCAGGTTACACAGATCACCCTCCGTCTTCCCTCCCCCAATTCTTCTTCTTCCTCATCTCCTCCCCGCACTCCTCCCAAGTCCAACCCGACCCGATTCAGGCGGCCCGCTAGTGCCTCCGCCTCTCGCCGCCATAAAAAGTTCAGAGGCGTTCGCCAGAGGCCTTGGGGTCGCTGGGCAGCCGAGATCCGGGACCCGAACAGAAGAAAACGAGTCTGGCTTGGAACCTTCGACACGGCGGAGGAAGCCGCATCGGTGTACGACAGGGCAGCACTGAAGCTCAAGGGTCCTAACGCGGTCACCAACTTCCCTAACTCCATAAGTACGGAGGATACACTGACGCCGATGGCTGTCGTCGTTGAGAGTCCCAGCACTGAAGGAACGATCTCCTACTCCGATTCGGCGGCGTCGCCCACATCTGTGCTTCCCTGCGACGGCGATTCGGCGGCGTTCGATGGTTTCCGTTACGGAGATGTGGATGCGTTCGGGTTCGACATAGATGTGCCGCTGAGTTTGCCGGACGTGAACTTGATGGTGTCAAGTCAACCGTTTGGGAAAGAGGAGTTCGGCGAGTTTGACCTCGATGATTTCTTGACGTGGCTCAACTAA 798 0.5602 MSLHSDLHLQHPETCTTTTRRRNHQRLLRIILADHDATDSDSDSDSDSSSSSYGNPQNSSRVKRQVTQITLRLPSPNSSSSSSPPRTPPKSNPTRFRRPASASASRRHKKFRGVRQRPWGRWAAEIRDPNRRKRVWLGTFDTAEEAASVYDRAALKLKGPNAVTNFPNSISTEDTLTPMAVVVESPSTEGTISYSDSAASPTSVLPCDGDSAAFDGFRYGDVDAFGFDIDVPLSLPDVNLMVSSQPFGKEEFGEFDLDDFLTWLN 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1054 265 PIRSF PTI6 3 265 IPR017392 GO:0003700
Lele01g1054 265 MobiDBLite consensus disorder prediction 44 80 - -
Lele01g1054 265 FunFam Ethylene-responsive transcription factor 2 109 168 - -
Lele01g1054 265 Gene3D AP2/ERF domain 109 169 IPR036955 GO:0003700|GO:0006355
Lele01g1054 265 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 205 - -
Lele01g1054 265 CDD AP2 109 169 IPR001471 GO:0003700|GO:0006355
Lele01g1054 265 MobiDBLite consensus disorder prediction 1 22 - -
Lele01g1054 265 SUPERFAMILY DNA-binding domain 110 169 IPR016177 GO:0003677
Lele01g1054 265 MobiDBLite consensus disorder prediction 36 116 - -
Lele01g1054 265 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Lele01g1054 265 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Lele01g1054 265 MobiDBLite consensus disorder prediction 101 116 - -
Lele01g1054 265 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Lele01g1054 265 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Lele01g1054 265 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1054 Lele-ChrLele01 6121799 6122596 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1054 19 205 AP2-EREBP Transcription Factor Family AT4G27950 43.147 2.64e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele01g1054 AP2 3.1e-16 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1054 01 6121799 6122596 Lele01g1054 01 6121799 6122596 ECH
Lele01g1054 01 6121799 6122596 Lele03g1059 03 6125336 6126948 hybridization
Lele01g1054 01 6121799 6122596 Lele04g1067 04 6666489 6667466 hybridization