LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele01g1053	ATGGCAACTGAAACACACAATGGTCTTGTGGCAATCATGGCAAATGAAAAACGTATTGCTCAAGTCATGAGCGATGTTGATGGGTTGTTATACCACTACATTGAAACAATGACACGTTCTGTTGACTGTAATTCTAAATTACAGATTCCTCCGTCTGATCCCTTGTTTAAGAAGAAAAAGAACATTTTGATGCAAGATCCTGATGGTGGTTGTTTCACTGAGGAGCTCCAACTGCAGAATCATGCAGCTAACTCTTCTAAGGTGTGTACAACAAGGCAGAAACCCCGACAAAAGCTCGTCAGAATTATAGTAGCTGACCCTCATGCTACTGACACTGACTCTTGCACCAGCGAAGATGATGTGGAAAAACCTATAACATCACGAGGAGGGGAGAGGCAAGTAACACAGATCTGCATCGACATTTGCTCGGATTCTGCTTCCTCTTTTGTCTCTACTCCTTTTCCTACCAAGGAAGACTTGACCCACATTGAGAAACCAAATAAATCATCCGGCAATGATGACTTGGCTGGTGGCCACAAGAAGTACAGGGGTGTTCGCCGGAGGAAATGGGGTCGGTGGGCTGCTGAAATCCGAGACCCAGTTAGTCGCAAAAGGCTCTGGCTTGGAACCTTTGACACTGCAGAGGAAGCTGCTTCTGAGTATGACAAGGCTGCTGTGAAGCTGAGGGGTCTTAATGCCATTACCAACTTCCCTCAGTCCGTGACAAAGGAGGTGAAGCCTGGCATCACCCGTGACAGCTCAAGCGCTGATAGTTTTACCTCGTTCAGTGCCCTGGCATCCCCAACATCTGTGCTGTCTTAG	822	0.4696	MATETHNGLVAIMANEKRIAQVMSDVDGLLYHYIETMTRSVDCNSKLQIPPSDPLFKKKKNILMQDPDGGCFTEELQLQNHAANSSKVCTTRQKPRQKLVRIIVADPHATDTDSCTSEDDVEKPITSRGGERQVTQICIDICSDSASSFVSTPFPTKEDLTHIEKPNKSSGNDDLAGGHKKYRGVRRRKWGRWAAEIRDPVSRKRLWLGTFDTAEEAASEYDKAAVKLRGLNAITNFPQSVTKEVKPGITRDSSSADSFTSFSALASPTSVLS	273

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele01g1053	273	ProSiteProfiles	AP2/ERF domain profile.	181	238	IPR001471	GO:0003700\|GO:0006355
	Lele01g1053	273	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	96	272	-	-
	Lele01g1053	273	SMART	rav1_2	181	244	IPR001471	GO:0003700\|GO:0006355
	Lele01g1053	273	MobiDBLite	consensus disorder prediction	159	180	-	-
	Lele01g1053	273	FunFam	Ethylene-responsive transcription factor 2	180	239	-	-
	Lele01g1053	273	SUPERFAMILY	DNA-binding domain	181	240	IPR016177	GO:0003677
	Lele01g1053	273	MobiDBLite	consensus disorder prediction	159	181	-	-
	Lele01g1053	273	CDD	AP2	180	240	IPR001471	GO:0003700\|GO:0006355
	Lele01g1053	273	Pfam	AP2 domain	181	230	IPR001471	GO:0003700\|GO:0006355
	Lele01g1053	273	PRINTS	Ethylene responsive element binding protein signature	204	220	IPR001471	GO:0003700\|GO:0006355
	Lele01g1053	273	PRINTS	Ethylene responsive element binding protein signature	182	193	IPR001471	GO:0003700\|GO:0006355
	Lele01g1053	273	Gene3D	AP2/ERF domain	180	240	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele01g1053	Lele-ChrLele01	6108899	6109876	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele01g1053	78	273	AP2-EREBP Transcription Factor Family	AT4G27950	38.537	6.84e-33	121

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele01g1053		AP2	6.3e-14	CL0081