Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1049 ATGAAAGGAATAACTAAACCGTATGGACAGGACACATACAAAAGTAGGAAGACGGTTGTGTATCGCCGTCATCCCGAGACTCACTCATGTAAGCAAGCAGGGCAAGAATATCTGGTTTACGCTATTGCCACTACCCTATCTGTGGGCTCTTCTCTCTCTCTCTCTGGTAACAAAGAAAAACCTGCAATTGCGAAGGAAGGAAGGAAGGAAGGAAGGAAGGCGATGTCGTACGTTCCTCCTCACCTCAGGAGCTCCAGCTCCACCACTGTTGCTGCCAGAATTTCATCTCTCGCCTTAGACACCAACGATCGCAGCAAGCTTCCCAATTCTCACTTCCACACTTCTCTCACTCCTTCGTCATCCTCCAGCTACTCCAATTCCTCTCGCCGGAGCTCCGGAGCTCCTCCTCTATCCCGCACTCTCTCCGTCCCCGACCCCGTGTTCCCTCATTGGTTACCGTCTGAACGCGTTTCTCGTATGAAGCTCGAGCAGGTTGAAGAGGTTCGACTGCGGCTTAATCTCGATGTTTCTGTTGCTTCTGACTCTCTTCCTGCACCTGCACCAATAGAATCATTTTCAGACATGTGCTTGAACCCAAGTATCATGAAGGATATTGCTTATCATGAATACACAAGGCCAACTTCTATCCAGGCACAAGCCATGCCAATTGCTCTTAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGCAGTGGAAAAACTGCAGCTTTCACCATTCCTATGATAGAGCATTGCTTGGCTCAACCACCAATTCGGCGTGGTGATGGTCCTTTAGCATTGGTTTTGGCTCCTACTAGAGAGCTTGCTCAACAAATAGAGAAAGAGGTTAAAGCTTTTAGCAGATCACTTGAGTTATTAAAAACTGCAATAGTTGTAGGGGGAACTAACATTGAAAAGCAGAGATCTGAGCTACGGGCTGGGGTTGACATAGTGGTTGCTACCCCTGGAAGATTCATCGATCATTTGCAACAAGCCAATACGTCCCTTTCTAGAATATCTTTTGTTGTTCTCGATGAGGCAGATAGGATGCTTGATATGGGCTTTGAACCACAGATAAGAGAGGTTATGAGAAATCTTCCAGAGAAGCATCAAACATTGTTATTCAGTGCAACTATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTAGCAAGTCCGGTGCAAGTGAAGGTAGGGAAAGTGAGTAGCCCAACAGCAAACGTTTGTCAAACTCTTGTGAAGGTTTCTGAAAATGAGAAGATTGACCGGCTTCTGGGTATGCTTGTTGAGGAGGCGTCACAGGCTGAAAAATGCAGTCGTCCATTTCCATTAACAATTGTGTTTGTGGAAAGGAAGACAAAGTGTGATGAAATTGCTGAAGCATTGGTAGCCCAAGGCTTATCTGCTGTTTCTCTTCATGGTGGCCGTAGTCAGAATGAAAGAGAGGCTGCTTTGCATGATTTTCGAAGTGCCTCCACTAACATTTTGGTTGCCACCGATGTTGCATCTCGTGGCTTGGATGTCACAGGAGTGTCACATGTCATCAACTTAGATCTTCCAAAGACCATGGAAGATTATGTGCACCGGATTGGCAGGACAGGGCGTGCAGGATCAACAGGCCAGGCGACTTCTTTTTACACTGATCGTGATATGTTCCTTGTTGCAAATATAAGGAAGGCTATAGCTGATGCTGTGTCTGGGAATGCTGTGGCTTTTGCAACCGGAAAGGTTGCTAGAAGGAAGGAGAAAGAGGCGGCAGCTGCCCACAAAGAGGCAAAGATAGCTTTGTCCAAGAACTTATCTTTTGGAACCGCCTCAATTGCTCTTGAGGATAAATATAGCTCCAAGCTTGAGAAGTTGGTTGACCAATGGATGATCCATCAAAATAGTGTGGTTTTGTGA 1905 0.4625 MKGITKPYGQDTYKSRKTVVYRRHPETHSCKQAGQEYLVYAIATTLSVGSSLSLSGNKEKPAIAKEGRKEGRKAMSYVPPHLRSSSSTTVAARISSLALDTNDRSKLPNSHFHTSLTPSSSSSYSNSSRRSSGAPPLSRTLSVPDPVFPHWLPSERVSRMKLEQVEEVRLRLNLDVSVASDSLPAPAPIESFSDMCLNPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIEHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLELLKTAIVVGGTNIEKQRSELRAGVDIVVATPGRFIDHLQQANTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTANVCQTLVKVSENEKIDRLLGMLVEEASQAEKCSRPFPLTIVFVERKTKCDEIAEALVAQGLSAVSLHGGRSQNEREAALHDFRSASTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRDMFLVANIRKAIADAVSGNAVAFATGKVARRKEKEAAAAHKEAKIALSKNLSFGTASIALEDKYSSKLEKLVDQWMIHQNSVVL 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1049 634 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 190 218 IPR014014 GO:0003724
Lele01g1049 634 Pfam Helicase conserved C-terminal domain 439 538 IPR001650 -
Lele01g1049 634 MobiDBLite consensus disorder prediction 102 141 - -
Lele01g1049 634 Gene3D - 403 596 IPR027417 -
Lele01g1049 634 Pfam DEAD/DEAH box helicase 214 384 IPR011545 GO:0003676|GO:0005524
Lele01g1049 634 SMART helicmild6 457 538 IPR001650 -
Lele01g1049 634 CDD SF2_C_DEAD 411 547 - -
Lele01g1049 634 MobiDBLite consensus disorder prediction 51 73 - -
Lele01g1049 634 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 343 351 IPR000629 -
Lele01g1049 634 SMART ultradead3 209 414 IPR014001 -
Lele01g1049 634 CDD DEADc 201 398 - -
Lele01g1049 634 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 221 397 IPR014001 -
Lele01g1049 634 Coils Coil 276 296 - -
Lele01g1049 634 MobiDBLite consensus disorder prediction 102 138 - -
Lele01g1049 634 Gene3D - 150 401 IPR027417 -
Lele01g1049 634 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 421 579 IPR001650 -
Lele01g1049 634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 262 558 IPR027417 -
Lele01g1049 634 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 181 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1049 Lele-ChrLele01 6087633 6095500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1049 190 560 Eukaryotic Initiation Factors Gene Family AT1G72730 35.561 4.11e-68 226