Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1022 ATGGAAGCTTCGCCGGAGGACTCATATTCTCTTCCCTTGCCGTCTTTGCTGGCGAACGCGCCGAAGAGAAAGAGCACCGCCGAACTTGCACCCAACGAGCTGGCTAAGATGCTTTTAAATTCTGCTGAAGAAGTTTATCAGAGATTCATGGAAGAACTTCGAGCTGTACTCGTTATTCCGGCGGATGTGGCGGCCAAGAGAGAACGTCAAATCCGGTGTGTTTGGATGAAAAGAGGGGCAAAAATAATCCAGACCCCAAAATCCGTTCGTTTTCTTCCTGAAGAATGGACAAATATAATACTGGTTTTGAGATGGTATTATTCTCACGAGTTTGCAGTTCTTGTTGTTGTTGTTAGTGAGAATGTATTTGGTTGGAAGATTTCTATAGCCATGTGTCCCTTGGCTAATCATGTTCAGCGCACTATAGTGTTTTTCATCTACAAAATTGAGAAGTCCCTCTACGCTGGTAGTTCTTTCTTTCAAAATAATGAATAATCTACAATCAAATTTTCTGTTACTGATGCAGGTGTTATGGAGATATCCTTGTTGAAGATGCTTGTTAATGGCGTATCCTCATTTTTGCATCTATCTTTTTCTGGGAATGGGAACTCAGAATTTGTTTCCAAGTATTACCAAAAGGTGGAGGAGACACTTAAGTTGTTCAAGCCTATAGCTGATGCTTTGGTTAATTCTGAATTAGCTTCTGATGAAGTGCTTAACAAAGCATTTGAGGAAGTGGGTCGGGCTATGGATGAGTTGAGGGAGCTTTTTGGGAATTGGCACCCCTTGTCTAGCAAAGTTTACTTTGTTACGCAAGTTGAATCCTTGCGATCTAGGATTCAGACTTCAGCACTCAATATTTTCCAGCAGATGAAGACTTCTCATCTAAGTCTCCCAGACGAACTGAATACTGTACAAGTTGAGCATTGTGTTGAGAAACTTAAGCTTTTGGGACATGAGGAGGAAATCTTGTCAGTCATTAAAGAAGCTATTAGCGAACAAGTGGAAGGTGCAGGACCTAGTTCAGAGGTCCTAGCAAACATTGCTGAGAGCCTTGGCCTGAAGTCTAACCAAGAGATTCTGATTGAGGCTGTAGCCCTTGAAAAGTTGAAGGAGATTGCTGAACAAGCTGAAAAAACTACTGAAGCCGAGTATATTGATCAAATGATTACTCTTGTAACTTGTATGCATGAGCGTCTTGTTGCGCTTAAGCAAGCCCAGAGCTGTAGCCCAGTTGCAGTACCTCCTGATTTTTGCTGTCCTCTTTCTTTGGAGCTAATGATGGATCCAGTAATTGTGGCTTCAGGGCAAACTTATGAGCGGGCTTTCATCAAGAACTGGATTGATTTGGGACTTACCGTCTGTCCAAAGACTCGTCAGGCCTTGGCTCACACCAACTTAATACCTAACTACACTGTAAAGGCGTTAATTGCAAACTGGTGTGAATCAAACAATGTGAAGCCAGCTGATCCCATAGTGTCCACAAACTTAAATCAAGCATCTTTTCTTCATGGGTACATGGAATCTGGTGCATCCAGGGAATCGCCTGTTTTTGCCCGTTCTAAGACCAACCATCCATCCTCCCCGGAGGCAGTTCGCTCCCATTCTTTCAGTTCTCCAAGTAAAACTTCTGGAGTAATCCACAGAGAGGGAACATCACCATATCATCCTCGTTCGACTTCAGAAGGTTCCTTAAGTGGCATGGCTAATGGACAGTGCTTGGATTTTGCAAGAACATCACCTGCAGGTTCTGATGATAGGTCTGCTAGCTCAGATGAAAGGAGTGAGGATTCCGGTGTCCAACTGTCAATGTCTCAATGTATGACTGAATCTTCCAATGCCCATAGCTCTGAACAATCCCGAGCCCATGTTAGAGCAGCTTCTGATTCCAGTGCACTTTCCAGTATTCAAGGAACACAAGGTGATGGTCCTCAGCTGTCAACCACTCCTGGCAATATTAAGGATGCTTCTGTGGGGGTAAATTCTGGGATAGATACTAACGGTGCTGCAGCTAATGGTGCTCCCCAGAGAGAACCTGAGATCTCACCCCGTGTGGAGACAAGGCCTCGAAACCAAAGTATATGGCGGCGGCCATCAGAAAGATTTGTTCCTAGAGTTGTGCCCTCTGCCGGTGAAACAAGACCTGATCTTTCTGGAATTGAAGTCGAGGTTAAGAGTTTGGTTGAGGACCTGAAGAGTGCTTCTCTTGATACTCAAAGGGAGGCAACATCAAGGCTCCGCCTTCTTGCTAAGCATAATATGGATAATCGACTCGTGATTGCAAACTGTGGAGCCATTGACTTGTTGGTTGACTTGCTTAAATCAAATGATACGATGATGCAGGAAAATTCTGTTACAGCGCTTCTGAACTTATCAATCAATGACAACAACAAAAGTGCAATTGCAAATGCTGGTGCAATTGATCCTCTAATCCATGTGCTTGAGACAGGAAGCCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTCTTCAGCTTATCAGTGATTGAAGAAAACAAAATCAAGATAGGGAGGTCTGGGGCAATTAGGCCTCTGGTTGATTTATTAGGTAATGGAACTCCAAGAGGAAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATTTATCATGAAAACAAGGGCCGCATCGTTCAAGCTGGAGCTGTGAAGCACCTTGTGGAATTAATGGATCCAGCGGCTGGAATGGTTGATAAGGCAGTGGCTGTTTTAGCAAACCTTGCCACAATTCAAGAAGGAAGAACCGCCATTGGCACGGAAGGTGGGATCCCTGTTTTAGTTGAGGTTGTCGAGTTGGGTTCTGTGAGAGGAAAGGAGAATGCCGCCGCGGCTCTACTACATCTTTGCTCAAACAATCCTCGATATTTGAGCACAGTGCTTCAAGAAGGAGCTGTCCCACCATTAGTAGCTTTGTCACAGTCAGGCACCCCAAGGGCTAAAGAAAAGGCCCAGGCTCTCCTCAACCAGATTAGAAATCAAAGACACAATGCTGGGAGAGGCTGA 3021 0.4449 MEASPEDSYSLPLPSLLANAPKRKSTAELAPNELAKMLLNSAEEVYQRFMEELRAVLVIPADVAAKRERQIRCVWMKRGAKIIQTPKSVRFLPEEWTNIILVLRWYYSHEFAVLVVVVSENVFGWKISIAMCPLANHVQRTIVFFIYKIEKSLYAGSSFFQNNEXSTIKFSVTDAGVMEISLLKMLVNGVSSFLHLSFSGNGNSEFVSKYYQKVEETLKLFKPIADALVNSELASDEVLNKAFEEVGRAMDELRELFGNWHPLSSKVYFVTQVESLRSRIQTSALNIFQQMKTSHLSLPDELNTVQVEHCVEKLKLLGHEEEILSVIKEAISEQVEGAGPSSEVLANIAESLGLKSNQEILIEAVALEKLKEIAEQAEKTTEAEYIDQMITLVTCMHERLVALKQAQSCSPVAVPPDFCCPLSLELMMDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQALAHTNLIPNYTVKALIANWCESNNVKPADPIVSTNLNQASFLHGYMESGASRESPVFARSKTNHPSSPEAVRSHSFSSPSKTSGVIHREGTSPYHPRSTSEGSLSGMANGQCLDFARTSPAGSDDRSASSDERSEDSGVQLSMSQCMTESSNAHSSEQSRAHVRAASDSSALSSIQGTQGDGPQLSTTPGNIKDASVGVNSGIDTNGAAANGAPQREPEISPRVETRPRNQSIWRRPSERFVPRVVPSAGETRPDLSGIEVEVKSLVEDLKSASLDTQREATSRLRLLAKHNMDNRLVIANCGAIDLLVDLLKSNDTMMQENSVTALLNLSINDNNKSAIANAGAIDPLIHVLETGSPEAKENSAATLFSLSVIEENKIKIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIYHENKGRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIQEGRTAIGTEGGIPVLVEVVELGSVRGKENAAAALLHLCSNNPRYLSTVLQEGAVPPLVALSQSGTPRAKEKAQALLNQIRNQRHNAGRG 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1022 1006 Gene3D - 796 901 IPR011989 -
Lele01g1022 1006 Gene3D - 902 1005 IPR011989 -
Lele01g1022 1006 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 846 888 IPR000225 GO:0005515
Lele01g1022 1006 SMART arm_5 957 998 IPR000225 GO:0005515
Lele01g1022 1006 SMART arm_5 916 956 IPR000225 GO:0005515
Lele01g1022 1006 SMART arm_5 835 875 IPR000225 GO:0005515
Lele01g1022 1006 SMART arm_5 876 915 IPR000225 GO:0005515
Lele01g1022 1006 SMART arm_5 794 834 IPR000225 GO:0005515
Lele01g1022 1006 SMART arm_5 753 793 IPR000225 GO:0005515
Lele01g1022 1006 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 887 928 IPR000225 GO:0005515
Lele01g1022 1006 SUPERFAMILY ARM repeat 724 996 IPR016024 -
Lele01g1022 1006 CDD RING-Ubox_PUB 418 460 IPR045210 -
Lele01g1022 1006 MobiDBLite consensus disorder prediction 681 695 - -
Lele01g1022 1006 Pfam U-box domain 414 484 IPR003613 GO:0004842|GO:0016567
Lele01g1022 1006 Gene3D - 713 795 IPR011989 -
Lele01g1022 1006 MobiDBLite consensus disorder prediction 516 568 - -
Lele01g1022 1006 ProSiteProfiles U-box domain profile. 413 487 IPR003613 GO:0004842|GO:0016567
Lele01g1022 1006 MobiDBLite consensus disorder prediction 595 669 - -
Lele01g1022 1006 SUPERFAMILY RING/U-box 407 489 - -
Lele01g1022 1006 Pfam Armadillo/beta-catenin-like repeat 794 833 IPR000225 GO:0005515
Lele01g1022 1006 Pfam Armadillo/beta-catenin-like repeat 755 792 IPR000225 GO:0005515
Lele01g1022 1006 Pfam Armadillo/beta-catenin-like repeat 837 874 IPR000225 GO:0005515
Lele01g1022 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 491 IPR013083 -
Lele01g1022 1006 PANTHER U BOX DOMAIN-CONTAINING 208 995 - -
Lele01g1022 1006 MobiDBLite consensus disorder prediction 513 697 - -
Lele01g1022 1006 FunFam RING-type E3 ubiquitin transferase 413 488 - -
Lele01g1022 1006 SMART Ubox_2 417 480 IPR003613 GO:0004842|GO:0016567
Lele01g1022 1006 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 764 806 IPR000225 GO:0005515
Lele01g1022 1006 FunFam RING-type E3 ubiquitin transferase 708 1002 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1022 Lele-ChrLele01 5917850 5924945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1022 373 1006 U-box Gene Family AT2G23140 61.180 0.0 698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1022 01 5917850 5924945 Lele03g1024 03 5929449 5936925 hybridization
Lele01g1022 01 5917850 5924945 Lele04g1027 04 6361131 6366894 hybridization