Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1005 ATGGCGTCTTCTTCGGGAAGCCTTGACACTTCTGGTAACTCCCACCCCACCTTCACTTTCTCCACGCATCCATTCATGAATACTTCTTTCTCTGAACTTCTGGCTTCTCCCCCCGCCGCCGCCGATAACCCCGCCTCCGCCGTCGAAAAACCGCGCGGATTGTCAGATCGTATCGCTGAGAGAACTGGGTCGGGTGTGCCCAAGTTCAAGTCGACCCCACCTCCTTCTCTGCCTCTCTCTCCTCCTGCCATCTCTCCTTCTTCTTACTTCGCCATCCCTGCTGGGTTGAGCCCTGCAGAGCTTCTCGATTCGCCTGTTCTCCTTAATGCTTCTAACATTTTGCCATCTCCGACAACTGGAGCATTCTCTGCCCAAGCCTTCAATTGGAAGAGCAGTTCTGGGCAAAACCTGCAAAATATGAAAGAAGAGGAAGAGAACTTCTCAAGTTTCTCGTTTCAACCCCAACCCAGACCTCCTCTTCTATCCACCACAACGTTTCAAAATTCAGCTGCCTCTAATCAAACGGCATGGAGTCTTCAAGAAGCCACGAAGCAAGATAACTTTTCTTCAGGAAAGAATATGGTGAAAGCCGAGAACGCTTCACAGAACTATTCCTCTGAGATGCTAATCAGTAATGTCCAAGCAAACCATAATAATGGGTTTCAATCGGATCATGGAAATTACCATCCACAACCTCAGACTTTAAGCAGAAGGTCAGACGATGGATATAACTGGAGAAAATATGGGCAGAAGCAAGTGAAAGGAAGTGAGAATCCTAGAAGCTACTACAAATGCACATACCCTAATTGCCCAACAAAGAAGAAGGTTGAGAGGTCTCTGGATGGGCAAATTACTGAGATAGTTTACAAGGGAACACATAACCACCCCAAGCCTCAGGCAACTAGGAGAAACTCATCAAATGCATCTTCTCTCGCAATTGCTGCTTCAAATTCTGTTGCAGCTGAAATCCCAGATCAGTCATTTGCCAGCCATGGTAATGGACAAATGGATTCAGCTGCAACACCAGAGAACTCATCGATATCAATGGGGGACGATGATTTTGAACAGACTTCCCAGAGGACTAGATCAGGAGGAGATGAGTTTGATGAAGACGAATCTAATGCCAAAAGATGGAAAATGGAAGGTGAAAATGAGGGCATGTCGGCAGCTGGAAGCAGAACAGTAAGAGAACCCAGAGTCGTAGTCCAGACAACCAGTGACATAGATATTCTAGATGATGGATACAGATGGAGAAAATACGGGCAAAAAGTAGTGAAGGGAAATCCAAATCCAAGGAGTTACTACAAATGCACGCACCCAGGATGTCCGGTGAGGAAGCATGTAGAGAGAGCTTCACACGACCTAAGGGCAGTGATCACAACGTACGAGGGAAAGCATAACCATGATGTCCCTGCGGCCAGAGGGAGTGGCAGCCATTCTGTGAACAGACCTCTCTTAAACAATTCCACAAACACCAACGGTGCAATGACGGAAGCCATAAGGCCATCGGCCGTCACACACAACACTAACAACTCTATTCAGAATTTTAGGGCCGGAGCGTCAGGACCAGAAGGCATAGGGATGCTTCAGGGTCCAGGAAGCTTCGGGTTTTCAGGGTTTGGGAATCCAATGGGGTCTTTCATGAACAATAACACCAATAATAATAACCAGCAGCAAGGACAATCTGGGAATGGATTTTCTTCCAGAGCAAAGGAGGAGCCGAGGGATGACATGTTTCTGGAGTCTCTACTGTGCTGA 1758 0.4738 MASSSGSLDTSGNSHPTFTFSTHPFMNTSFSELLASPPAAADNPASAVEKPRGLSDRIAERTGSGVPKFKSTPPPSLPLSPPAISPSSYFAIPAGLSPAELLDSPVLLNASNILPSPTTGAFSAQAFNWKSSSGQNLQNMKEEEENFSSFSFQPQPRPPLLSTTTFQNSAASNQTAWSLQEATKQDNFSSGKNMVKAENASQNYSSEMLISNVQANHNNGFQSDHGNYHPQPQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQATRRNSSNASSLAIAASNSVAAEIPDQSFASHGNGQMDSAATPENSSISMGDDDFEQTSQRTRSGGDEFDEDESNAKRWKMEGENEGMSAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPLLNNSTNTNGAMTEAIRPSAVTHNTNNSIQNFRAGASGPEGIGMLQGPGSFGFSGFGNPMGSFMNNNTNNNNQQQGQSGNGFSSRAKEEPRDDMFLESLLC 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1005 585 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 103 507 IPR044810 GO:0003700
Lele01g1005 585 MobiDBLite consensus disorder prediction 290 309 - -
Lele01g1005 585 MobiDBLite consensus disorder prediction 513 585 - -
Lele01g1005 585 MobiDBLite consensus disorder prediction 217 243 - -
Lele01g1005 585 MobiDBLite consensus disorder prediction 327 354 - -
Lele01g1005 585 Gene3D WRKY domain 227 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele01g1005 585 ProSiteProfiles WRKY domain profile. 240 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele01g1005 585 MobiDBLite consensus disorder prediction 467 494 - -
Lele01g1005 585 SUPERFAMILY WRKY DNA-binding domain 403 471 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele01g1005 585 Pfam WRKY DNA -binding domain 240 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele01g1005 585 Pfam WRKY DNA -binding domain 412 468 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele01g1005 585 MobiDBLite consensus disorder prediction 217 239 - -
Lele01g1005 585 MobiDBLite consensus disorder prediction 543 568 - -
Lele01g1005 585 MobiDBLite consensus disorder prediction 36 83 - -
Lele01g1005 585 Gene3D WRKY domain 398 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele01g1005 585 FunFam WRKY transcription factor 33 398 464 - -
Lele01g1005 585 SUPERFAMILY WRKY DNA-binding domain 238 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele01g1005 585 MobiDBLite consensus disorder prediction 139 175 - -
Lele01g1005 585 MobiDBLite consensus disorder prediction 355 383 - -
Lele01g1005 585 ProSiteProfiles WRKY domain profile. 406 471 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele01g1005 585 MobiDBLite consensus disorder prediction 1 21 - -
Lele01g1005 585 SMART WRKY_cls 411 470 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele01g1005 585 SMART WRKY_cls 239 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele01g1005 585 MobiDBLite consensus disorder prediction 327 394 - -
Lele01g1005 585 MobiDBLite consensus disorder prediction 480 494 - -
Lele01g1005 585 FunFam WRKY transcription factor 230 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1005 Lele-ChrLele01 5814728 5817360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g1005 66 584 WRKY Transcription Factor Family AT2G38470 46.717 6.95e-116 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele01g1005 WRKY 1.6e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1005 01 5814728 5817360 Lele26g1649 26 19621875 19623415 CCT
Lele01g1005 01 5814728 5817360 Lele28g1645 28 17295126 17296649 CCT
Lele01g1005 01 5814728 5817360 Lele01g1005 01 5814728 5817360 ECH
Lele01g1005 01 5814728 5817360 Lele03g1006 03 5832480 5835100 hybridization